View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16967_high_19 (Length: 339)
Name: NF16967_high_19
Description: NF16967
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16967_high_19 |
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Alignment Details
Target: chr1 (Bit Score: 308; Significance: 1e-173; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 1 - 320
Target Start/End: Complemental strand, 48953392 - 48953073
Alignment:
| Q |
1 |
agtgacatggacattgacatgcttagcataaacagagctaatatgcccacaaccaaggcaggtctagtgttcatcaacattctttgcaacaatccaactg |
100 |
Q |
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| T |
48953392 |
agtgacatggacattgacatgcttagcataaacagagctaatatgcccacagccaaggcaggtctagtgttcatcaacattctttgcaacaatccaactg |
48953293 |
T |
|
| Q |
101 |
catcacatacatccgaaccataattctcaaaatacttcttctcccattcagtccaatcagaatgatctttagtctttgtttccaccatctcaatctcacg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48953292 |
catcacatacatccgaaccataattctcaaaatacttcttctcccattcagtccaatcagaatgatctttagtctttgtttccaccatctcaatctcacg |
48953193 |
T |
|
| Q |
201 |
gattcgcattctaagaatgatcatgttctcatccaccaacttgccatcatattgttggccaaatgggtctctttttgatgcacagatataactcttgtta |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
48953192 |
gattcgcattctaagaatgatcatgttctcatccaccaacttgccatcatattgttggccaaatgggtctctttttgatgcacagataaaactcttgtta |
48953093 |
T |
|
| Q |
301 |
ctatgtgaattgaatggtgt |
320 |
Q |
| |
|
||||||||||||||||||| |
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| T |
48953092 |
ttatgtgaattgaatggtgt |
48953073 |
T |
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