View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16967_high_23 (Length: 321)
Name: NF16967_high_23
Description: NF16967
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16967_high_23 |
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Alignment Details
Target: chr1 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 1 - 199
Target Start/End: Complemental strand, 39461297 - 39461099
Alignment:
| Q |
1 |
aaaagatctcaatgtttgaggaactaatccatatcaaggttttactttcattccaatccattcaaatttatcaatttcacagctaggtgttggttgtttt |
100 |
Q |
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| T |
39461297 |
aaaagatctcaatgtttgaggaactaatccatatcaaggttttattttcattccaatccattcaaatttatcaatttcacagctaggtgttggttgtttt |
39461198 |
T |
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| Q |
101 |
cattcacccaaatttcaacgaaaaagattgaagatactttgatttgtgggcagcggcagaaaatcgtattacattcgtcttggttgcaagcttgatggg |
199 |
Q |
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| T |
39461197 |
cattcacccaaatttcaacgaaaaagattgaagatactttgatttgtgggcagcggcagcaaatcgtattacattcgtcttggttgcaagcttgatggg |
39461099 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 46 - 118
Target Start/End: Original strand, 34329794 - 34329866
Alignment:
| Q |
46 |
tttcattccaatccattcaaatttatcaatttcacagctaggtgttggttgttttcattcacccaaatttcaa |
118 |
Q |
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|||||||| ||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||| |
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| T |
34329794 |
tttcattctgatccattcaaatttatcaatttcacagtgagaggttggttgttttcattcacccaaatttcaa |
34329866 |
T |
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