View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16967_high_28 (Length: 309)
Name: NF16967_high_28
Description: NF16967
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16967_high_28 |
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Alignment Details
Target: chr7 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 16 - 283
Target Start/End: Original strand, 8945816 - 8946083
Alignment:
| Q |
16 |
ataaagaaagggaactagatctagaagataaactgtactacatgataatgaagggtccttctaaaaatcatttagctccttcacgatgcgctttgaagcc |
115 |
Q |
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| T |
8945816 |
ataaagaaagggaactagatctagaagataacctgtactacatgataatgaagggtcgttctaaaaatcatttagctccttcacgatgtgctttgaagcc |
8945915 |
T |
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| Q |
116 |
gttataattgaaacttcaaaataacaacataataaagattatcatgcaacacatcgttggatctagaaagcaataaaaagaaattgaaaggaaaaaagtt |
215 |
Q |
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| T |
8945916 |
gttataattgaaacttcaaaataacaacataataaagattatcatgcaacacatcgttggatctagaaagcaataaaatgaaattgaaaggaaaaaagtt |
8946015 |
T |
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| Q |
216 |
tccattgggatatggaacaaaagataaatgaagggttaccacttaccaatcgatttcaatcagcagga |
283 |
Q |
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| T |
8946016 |
tcaattgggatatggaacaaaagataaatgaagggttaccacttagcaatcgatttcaatcagcagga |
8946083 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 16 - 283
Target Start/End: Original strand, 51856772 - 51857049
Alignment:
| Q |
16 |
ataaagaaagggaactagatctagaagataaactgtactacatgataatgaagggtccttctaaaaatcatttagctccttcacgatgcgctttgaagcc |
115 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51856772 |
ataaagaaagggaactagatctagaagataacctgtactacatgataatgaagggtccttctaaaaatcatttagctccttcacgatgcgctttgaagcc |
51856871 |
T |
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| Q |
116 |
gttataattgaaacttcaaaataacaaca-----------taataaagattatcatgcaacacatcgttggatctagaaagcaataaaaagaaattgaaa |
204 |
Q |
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| T |
51856872 |
gttataattggaacttcaaaataacaacaaatggaaaacataataaagattatcatgcaacgcatcgttggatctagaaagcaataaaaagaa-ttgaaa |
51856970 |
T |
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| Q |
205 |
ggaaaaaagtttccattgggatatggaacaaaagataaatgaagggttaccacttaccaatcgatttcaatcagcagga |
283 |
Q |
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| T |
51856971 |
ggaaaaaagtttcaattgggatatggaacaaaagataaatgaagggttaccacttaccaatcgatttcaatcagcagga |
51857049 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 93; Significance: 3e-45; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 16 - 144
Target Start/End: Original strand, 43263022 - 43263150
Alignment:
| Q |
16 |
ataaagaaagggaactagatctagaagataaactgtactacatgataatgaagggtccttctaaaaatcatttagctccttcacgatgcgctttgaagcc |
115 |
Q |
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||||||||||||||||||||||||||||||| ||||||| |||||| ||||||||||||||| ||||| |||||||| |||||||||| |||||||||| |
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| T |
43263022 |
ataaagaaagggaactagatctagaagataacctgtactgcatgatgttgaagggtccttctacaaatcctttagctcattcacgatgcactttgaagcc |
43263121 |
T |
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| Q |
116 |
gttataattgaaacttcaaaataacaaca |
144 |
Q |
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|| |||||||||||||||||||||||||| |
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| T |
43263122 |
gtaataattgaaacttcaaaataacaaca |
43263150 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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