View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16967_high_29 (Length: 308)
Name: NF16967_high_29
Description: NF16967
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16967_high_29 |
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| [»] scaffold0012 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 261; Significance: 1e-145; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 11 - 292
Target Start/End: Original strand, 35276511 - 35276792
Alignment:
| Q |
11 |
cagagagatattgatttcccaaagtaggaccaagctcaggctccattaaagcatccaatccacctttatcaacaacagcaccnnnnnnntcatcttcaaa |
110 |
Q |
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| T |
35276511 |
cagagagatattgatttcccaaagtaggaccaagctcaggctccattaaagcatccaatccacctttatcaacaacagcaccaaaaaactcatcttcaaa |
35276610 |
T |
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| Q |
111 |
ctgcatggcggtcatatccataacacgccaccgcataagcggacgagaacgaatgttacggcggagcatgtctccgataacgactttagagaaatcaatg |
210 |
Q |
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| T |
35276611 |
ctgcatggcggtcatatccataacacgccaccgcataagcggacgagaacgaatgttacggcggagcatgtctccgataacgactttagagaaatcaatg |
35276710 |
T |
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| Q |
211 |
ttggtgatggaagtaaagccggcgtcgtagaggtgttcggaaagacgggagttgccgcaaccggggacgaggacgggaagag |
292 |
Q |
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| T |
35276711 |
ttggtgatggaagtaaagccggcgtcgtagaggtgttcggaaagacgggagttgccgcaaccggggacgaggacgggaagag |
35276792 |
T |
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Target: scaffold0012 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0012
Description:
Target: scaffold0012; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 41 - 79
Target Start/End: Complemental strand, 145304 - 145266
Alignment:
| Q |
41 |
caagctcaggctccattaaagcatccaatccacctttat |
79 |
Q |
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| T |
145304 |
caagctctggctccattaaagcattcaatccacctttat |
145266 |
T |
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