View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16967_high_36 (Length: 239)

Name: NF16967_high_36
Description: NF16967
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16967_high_36
NF16967_high_36
[»] chr2 (35 HSPs)
chr2 (20-232)||(12746180-12746392)
chr2 (86-197)||(8420011-8420122)
chr2 (86-197)||(38853753-38853864)
chr2 (87-197)||(34582684-34582794)
chr2 (85-197)||(31091541-31091653)
chr2 (90-197)||(32766253-32766360)
chr2 (86-232)||(15441950-15442096)
chr2 (76-197)||(9616049-9616170)
chr2 (139-232)||(17466807-17466900)
chr2 (86-197)||(38854787-38854898)
chr2 (76-183)||(14887526-14887633)
chr2 (133-232)||(17330209-17330308)
chr2 (139-197)||(26586309-26586367)
chr2 (139-232)||(7073690-7073783)
chr2 (117-210)||(11985720-11985813)
chr2 (86-195)||(32764936-32765045)
chr2 (148-197)||(37607162-37607211)
chr2 (133-197)||(14704051-14704115)
chr2 (144-196)||(31442389-31442441)
chr2 (86-198)||(33439239-33439351)
chr2 (86-225)||(5914303-5914441)
chr2 (139-229)||(7412143-7412233)
chr2 (95-197)||(24459460-24459562)
chr2 (90-195)||(40000350-40000455)
chr2 (137-197)||(28864791-28864851)
chr2 (95-199)||(34037685-34037789)
chr2 (149-197)||(38985003-38985051)
chr2 (129-232)||(31814323-31814426)
chr2 (144-197)||(18675140-18675193)
chr2 (144-176)||(8420956-8420988)
chr2 (133-197)||(17466086-17466150)
chr2 (148-232)||(21733750-21733834)
chr2 (86-197)||(26585073-26585187)
chr2 (149-197)||(31443259-31443306)
chr2 (146-230)||(33161825-33161909)
[»] chr7 (34 HSPs)
chr7 (86-197)||(48646047-48646158)
chr7 (90-197)||(8879557-8879665)
chr7 (90-232)||(43457459-43457601)
chr7 (133-232)||(12223678-12223777)
chr7 (86-232)||(10899052-10899198)
chr7 (90-192)||(44333141-44333243)
chr7 (139-232)||(7259663-7259756)
chr7 (90-167)||(21062819-21062896)
chr7 (86-190)||(22621126-22621229)
chr7 (144-195)||(24288882-24288933)
chr7 (90-232)||(7258277-7258419)
chr7 (95-197)||(35727706-35727808)
chr7 (144-197)||(24844629-24844682)
chr7 (140-197)||(25621735-25621792)
chr7 (139-196)||(33607638-33607695)
chr7 (108-232)||(8048763-8048887)
chr7 (85-197)||(48788686-48788798)
chr7 (86-197)||(2677800-2677911)
chr7 (117-232)||(13578300-13578414)
chr7 (86-181)||(24934802-24934897)
chr7 (147-197)||(27067841-27067891)
chr7 (147-197)||(27210422-27210472)
chr7 (95-212)||(39708110-39708227)
chr7 (90-195)||(46286505-46286610)
chr7 (90-197)||(8374916-8375023)
chr7 (149-232)||(33060871-33060954)
chr7 (90-197)||(44334463-44334570)
chr7 (138-197)||(48777306-48777365)
chr7 (131-232)||(12220066-12220166)
chr7 (144-197)||(30925022-30925075)
chr7 (144-197)||(44530625-44530678)
chr7 (133-197)||(8375597-8375661)
chr7 (151-195)||(30917776-30917820)
chr7 (144-232)||(45584475-45584563)
[»] chr1 (24 HSPs)
chr1 (86-197)||(8975157-8975268)
chr1 (131-197)||(50107217-50107283)
chr1 (86-197)||(11060798-11060909)
chr1 (100-197)||(7945568-7945665)
chr1 (87-197)||(1001153-1001263)
chr1 (90-230)||(10332988-10333128)
chr1 (90-197)||(5782416-5782523)
chr1 (133-232)||(9339691-9339790)
chr1 (90-197)||(22856682-22856789)
chr1 (86-197)||(44719348-44719459)
chr1 (90-232)||(6612421-6612563)
chr1 (139-197)||(26518160-26518218)
chr1 (144-197)||(5783123-5783176)
chr1 (175-232)||(22857558-22857615)
chr1 (139-232)||(33342467-33342560)
chr1 (108-197)||(52440573-52440662)
chr1 (133-197)||(9341039-9341103)
chr1 (86-186)||(18897915-18898015)
chr1 (83-195)||(26519118-26519230)
chr1 (139-197)||(10333200-10333258)
chr1 (158-232)||(29765993-29766067)
chr1 (138-198)||(25037928-25037988)
chr1 (138-198)||(25043140-25043200)
chr1 (165-197)||(44720863-44720895)
[»] chr8 (21 HSPs)
chr8 (83-197)||(35178818-35178932)
chr8 (131-197)||(12637772-12637838)
chr8 (140-197)||(24198986-24199043)
chr8 (131-195)||(28006611-28006675)
chr8 (131-195)||(28063914-28063978)
chr8 (90-232)||(32898424-32898566)
chr8 (144-197)||(28524814-28524867)
chr8 (89-197)||(28005345-28005452)
chr8 (89-197)||(28062648-28062755)
chr8 (133-197)||(35177440-35177504)
chr8 (138-197)||(5965456-5965515)
chr8 (87-198)||(9626473-9626584)
chr8 (86-197)||(31073992-31074103)
chr8 (86-197)||(31075304-31075414)
chr8 (121-193)||(41121142-41121214)
chr8 (146-197)||(9625248-9625299)
chr8 (146-232)||(10407563-10407649)
chr8 (90-160)||(33314863-33314933)
chr8 (131-197)||(45476205-45476271)
chr8 (139-232)||(5736893-5736986)
chr8 (148-197)||(8569468-8569517)
[»] chr5 (20 HSPs)
chr5 (90-232)||(9538028-9538170)
chr5 (148-231)||(35538281-35538364)
chr5 (83-199)||(8074446-8074562)
chr5 (87-179)||(23772809-23772901)
chr5 (90-197)||(28591128-28591235)
chr5 (90-197)||(16611730-16611837)
chr5 (138-232)||(4592911-4593005)
chr5 (109-197)||(19182971-19183059)
chr5 (90-197)||(2466788-2466895)
chr5 (90-197)||(12445431-12445537)
chr5 (90-232)||(9537025-9537166)
chr5 (148-210)||(19271402-19271464)
chr5 (146-227)||(18004696-18004777)
chr5 (90-195)||(25590433-25590537)
chr5 (133-197)||(546050-546114)
chr5 (86-182)||(18400188-18400284)
chr5 (163-206)||(14881022-14881065)
chr5 (139-218)||(30970578-30970657)
chr5 (86-195)||(577836-577943)
chr5 (108-197)||(26327086-26327175)
[»] chr4 (22 HSPs)
chr4 (138-232)||(21621873-21621967)
chr4 (138-197)||(21623131-21623190)
chr4 (90-197)||(53771063-53771170)
chr4 (139-197)||(32244702-32244760)
chr4 (131-198)||(2786264-2786331)
chr4 (146-229)||(32244332-32244415)
chr4 (86-197)||(53770331-53770442)
chr4 (148-230)||(4701825-4701907)
chr4 (86-195)||(24746091-24746197)
chr4 (130-197)||(25810427-25810494)
chr4 (90-197)||(47878498-47878605)
chr4 (133-197)||(47874609-47874673)
chr4 (90-197)||(4703231-4703338)
chr4 (133-232)||(42278094-42278193)
chr4 (131-197)||(26172956-26173022)
chr4 (133-171)||(44158549-44158587)
chr4 (148-197)||(19050298-19050347)
chr4 (149-197)||(24753575-24753623)
chr4 (148-232)||(26170700-26170784)
chr4 (90-194)||(31844724-31844828)
chr4 (149-225)||(48740006-48740082)
chr4 (90-210)||(54574427-54574547)
[»] chr3 (24 HSPs)
chr3 (90-225)||(45600925-45601059)
chr3 (90-232)||(20464071-20464213)
chr3 (133-197)||(17700563-17700627)
chr3 (86-197)||(40205879-40205991)
chr3 (86-197)||(17701933-17702044)
chr3 (144-232)||(36827454-36827542)
chr3 (90-197)||(33428449-33428556)
chr3 (133-232)||(36278997-36279096)
chr3 (90-197)||(47118065-47118172)
chr3 (90-197)||(48572987-48573094)
chr3 (90-195)||(34263807-34263912)
chr3 (133-197)||(48574473-48574537)
chr3 (149-232)||(612275-612358)
chr3 (83-230)||(2591622-2591769)
chr3 (90-197)||(19114535-19114642)
chr3 (90-231)||(52318297-52318438)
chr3 (133-197)||(11773065-11773129)
chr3 (85-225)||(19115133-19115272)
chr3 (146-201)||(29188400-29188455)
chr3 (90-197)||(55388075-55388182)
chr3 (139-197)||(36280331-36280389)
chr3 (140-197)||(33427804-33427860)
chr3 (133-197)||(2592021-2592085)
chr3 (131-195)||(39497250-39497314)
[»] scaffold0034 (1 HSPs)
scaffold0034 (90-197)||(116057-116164)
[»] chr6 (8 HSPs)
chr6 (86-187)||(3778818-3778919)
chr6 (90-217)||(31218957-31219084)
chr6 (86-181)||(6468811-6468906)
chr6 (86-197)||(12676484-12676595)
chr6 (144-195)||(29350225-29350276)
chr6 (90-197)||(30748001-30748108)
chr6 (90-197)||(31219174-31219281)
chr6 (139-197)||(5265250-5265308)
[»] scaffold0767 (1 HSPs)
scaffold0767 (139-197)||(5650-5708)
[»] scaffold0039 (1 HSPs)
scaffold0039 (90-232)||(79075-79217)


Alignment Details
Target: chr2 (Bit Score: 169; Significance: 9e-91; HSPs: 35)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 20 - 232
Target Start/End: Complemental strand, 12746392 - 12746180
Alignment:
Q  20 taaggagttcaaattaagtccagagccgtaaaatggattccaacttgaagttagatattatagttcgagtaaatggtcactttggttcctgactttgcac 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||| ||||| |||||    
T  12746392 taaggagttcaaattaagtccagagccgtaaaatggattccaacttgaagttagatattgtagtttgagtaaatggtcactttggttcttgactctgcac 12746293  T
Q  120 ctcgcagtcttaaaggttcctgattcaggattaaatacaaagtagtccctgaatgtgcacttccgttatcactttagttcataatgttaaatagttctgg 219  Q
    ||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||| ||||||||||||||||||| |||||||||||||| |||| |    
T  12746292 ctcgcagtcttaaaggttcctgactcaggattaaatacaaagtagttcctgaatgtgcccttccgttatcactttagtccataatgttaaataattctag 12746193  T
Q  220 taagtgatgatgt 232  Q
    |||||||| ||||    
T  12746192 taagtgattatgt 12746180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 86 - 197
Target Start/End: Original strand, 8420011 - 8420122
Alignment:
Q  86 gagtaaatggtcactttggttcctgactttgcacctcgcagtcttaaaggttcctgattcaggattaaatacaaagtagtccctgaatgtgcacttccgt 185  Q
    |||||||||||||||||||| ||||||| ||||  |||| |||  ||| || ||||| ||| ||||||||||||||||||||||||||||||||||| ||    
T  8420011 gagtaaatggtcactttggtccctgactctgcatttcgcggtcacaaatgtccctgagtcaagattaaatacaaagtagtccctgaatgtgcacttctgt 8420110  T
Q  186 tatcactttagt 197  Q
    ||||| ||||||    
T  8420111 tatcagtttagt 8420122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 86 - 197
Target Start/End: Original strand, 38853753 - 38853864
Alignment:
Q  86 gagtaaatggtcactttggttcctgactttgcacctcgcagtcttaaaggttcctgattcaggattaaatacaaagtagtccctgaatgtgcacttccgt 185  Q
    ||||||| |||||||||||| ||||||| | ||| ||   ||| |||||||  |||| |||||||||||||||||||||||||| |||||||||||||||    
T  38853753 gagtaaacggtcactttggtccctgactctacacttcattgtcataaaggtctctgactcaggattaaatacaaagtagtccctaaatgtgcacttccgt 38853852  T
Q  186 tatcactttagt 197  Q
    ||||| ||||||    
T  38853853 tatcaatttagt 38853864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 87 - 197
Target Start/End: Complemental strand, 34582794 - 34582684
Alignment:
Q  87 agtaaatggtcactttggttcctgactttgcacctcgcagtcttaaaggttcctgattcaggattaaatacaaagtagtccctgaatgtgcacttccgtt 186  Q
    ||||||||||||| || || ||||||| ||||||| || ||   ||||||   ||| || ||||||||||||||||||||||||||||||||||||||||    
T  34582794 agtaaatggtcacgttagtccctgactctgcaccttgctgttacaaaggtcattgactcgggattaaatacaaagtagtccctgaatgtgcacttccgtt 34582695  T
Q  187 atcactttagt 197  Q
    |||||||||||    
T  34582694 atcactttagt 34582684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 85 - 197
Target Start/End: Complemental strand, 31091653 - 31091541
Alignment:
Q  85 cgagtaaatggtcactttggttcctgactttgcacctcgcagtcttaaaggttcctgattcaggattaaatacaaagtagtccctgaatgtgcacttccg 184  Q
    |||| |||| ||||||||||| ||||||| ||||||| || |||  | |||| ||||| |||||||||||||||||  ||||||||| | ||||||||||    
T  31091653 cgagcaaatagtcactttggtccctgactctgcaccttgctgtcacataggtccctgactcaggattaaatacaaataagtccctgactctgcacttccg 31091554  T
Q  185 ttatcactttagt 197  Q
    |||||||||||||    
T  31091553 ttatcactttagt 31091541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 90 - 197
Target Start/End: Complemental strand, 32766360 - 32766253
Alignment:
Q  90 aaatggtcactttggttcctgactttgcacctcgcagtcttaaaggttcctgattcaggattaaatacaaagtagtccctgaatgtgcacttccgttatc 189  Q
    |||| ||||||||||| ||||||| |||||||||  |||  | |||| ||||| |||||||||||||||||  ||||||||| | |||||||||||||||    
T  32766360 aaatagtcactttggtccctgactctgcacctcgttgtcacataggtccctgactcaggattaaatacaaataagtccctgactctgcacttccgttatc 32766261  T
Q  190 actttagt 197  Q
    ||||||||    
T  32766260 actttagt 32766253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 86 - 232
Target Start/End: Complemental strand, 15442096 - 15441950
Alignment:
Q  86 gagtaaatggtcactttggttcctgactttgcacctcgcagtcttaaaggttcctgattcaggattaaatacaaagtagtccctgaatgtgcacttccgt 185  Q
    |||||||||||| ||||| |  |||||| ||  |||||| |||  |||| ||||||| |||||||||||||||||||||||| |||||||||||||   |    
T  15442096 gagtaaatggtcgctttgttctctgactctgttcctcgctgtcacaaagattcctgactcaggattaaatacaaagtagtccttgaatgtgcacttttat 15441997  T
Q  186 tatcactttagttcataatgttaaatagttctggtaagtgatgatgt 232  Q
    ||||||||||||   || ||||||||| || || ||| |||||||||    
T  15441996 tatcactttagtctctagtgttaaataattttgttaactgatgatgt 15441950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 76 - 197
Target Start/End: Complemental strand, 9616170 - 9616049
Alignment:
Q  76 attatagttcgagtaaatggtcactttggttcctgactttgcacctcgcagtcttaaaggttcctgattcaggattaaatacaaagtagtccctgaatgt 175  Q
    |||||| | ||||||||| ||||||||||| | ||||| | ||||  || ||  ||||||||||| | |||  ||||||||||||||||||||||||||     
T  9616170 attatattacgagtaaatagtcactttggtccttgactctacaccctgctgttataaaggttcctaactcataattaaatacaaagtagtccctgaatgc 9616071  T
Q  176 gcacttccgttatcactttagt 197  Q
    |||||| |||||||| ||||||    
T  9616070 gcactttcgttatcaatttagt 9616049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 139 - 232
Target Start/End: Complemental strand, 17466900 - 17466807
Alignment:
Q  139 ctgattcaggattaaatacaaagtagtccctgaatgtgcacttccgttatcactttagttcataatgttaaatagttctggtaagtgatgatgt 232  Q
    |||| |||||||||||||||||| |||| |||| | |||||||||||||||||||||||  |  | |||||||| ||||| |||||||||||||    
T  17466900 ctgactcaggattaaatacaaagaagtctctgactctgcacttccgttatcactttagtctaagacgttaaataattctgttaagtgatgatgt 17466807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 86 - 197
Target Start/End: Original strand, 38854787 - 38854898
Alignment:
Q  86 gagtaaatggtcactttggttcctgactttgcacctcgcagtcttaaaggttcctgattcaggattaaatacaaagtagtccctgaatgtgcacttccgt 185  Q
    |||||||| ||||||||||| ||||||| | ||| |||  ||| |||||||   ||| |||||||||||||||||||||| ||| |||||||||||  ||    
T  38854787 gagtaaatagtcactttggtccctgactctacacttcgttgtcataaaggtctttgactcaggattaaatacaaagtagttcctaaatgtgcacttatgt 38854886  T
Q  186 tatcactttagt 197  Q
    ||||| ||||||    
T  38854887 tatcaatttagt 38854898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 76 - 183
Target Start/End: Complemental strand, 14887633 - 14887526
Alignment:
Q  76 attatagttcgagtaaatggtcactttggttcctgactttgcacctcgcagtcttaaaggttcctgattcaggattaaatacaaagtagtccctgaatgt 175  Q
    |||||| || |||||||||||||||||||| ||  ||| |||||||||| |||   ||||| ||||| ||||||||||| | ||||||  ||||||||||    
T  14887633 attatattttgagtaaatggtcactttggtcccaaactctgcacctcgctgtcacgaaggtccctgactcaggattaaacataaagtataccctgaatgt 14887534  T
Q  176 gcacttcc 183  Q
    ||| ||||    
T  14887533 gcaattcc 14887526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 133 - 232
Target Start/End: Complemental strand, 17330308 - 17330209
Alignment:
Q  133 aggttcctgattcaggattaaatacaaagtagtccctgaatgtgcacttccgttatcactttagttcataatgttaaatagttctggtaagtgatgatgt 232  Q
    |||| ||||| |||||||||||||||||  |||| |||| | |||| |||||||||||||||||| ||| | ||||| |  ||||| |||||||||||||    
T  17330308 aggtccctgactcaggattaaatacaaataagtctctgactctgcatttccgttatcactttagtccatgacgttaagttattctgttaagtgatgatgt 17330209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 139 - 197
Target Start/End: Complemental strand, 26586367 - 26586309
Alignment:
Q  139 ctgattcaggattaaatacaaagtagtccctgaatgtgcacttccgttatcactttagt 197  Q
    |||| ||| ||||||||| |||||||||  |||||||||||||||||||||||||||||    
T  26586367 ctgactcaagattaaatataaagtagtctttgaatgtgcacttccgttatcactttagt 26586309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 139 - 232
Target Start/End: Original strand, 7073690 - 7073783
Alignment:
Q  139 ctgattcaggattaaatacaaagtagtccctgaatgtgcacttccgttatcactttagttcataatgttaaatagttctggtaagtgatgatgt 232  Q
    ||||||| ||||||||||||||  |||| |||| | ||||||||||||||||||||||| | | | ||||| |  ||||| |||||||||||||    
T  7073690 ctgattcgggattaaatacaaataagtctctgattctgcacttccgttatcactttagtccctgacgttaagttattctgttaagtgatgatgt 7073783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 117 - 210
Target Start/End: Original strand, 11985720 - 11985813
Alignment:
Q  117 cacctcgcagtcttaaaggttcctgattcaggattaaatacaaagtagtccctgaatgtgcacttccgttatcactttagttcataatgttaaa 210  Q
    |||||||| ||  |||||||  |||| ||||||||||||||||||||||| ||||| ||||| || |||||||| |||||| | ||| ||||||    
T  11985720 cacctcgctgttataaaggtctctgactcaggattaaatacaaagtagtctctgaaggtgcattttcgttatcagtttagtccctaacgttaaa 11985813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 86 - 195
Target Start/End: Original strand, 32764936 - 32765045
Alignment:
Q  86 gagtaaatggtcactttggttcctgactttgcacctcgcagtcttaaaggttcctgattcaggattaaatacaaagtagtccctgaatgtgcacttccgt 185  Q
    |||||||| |||||||| || ||||| | |||| || |  ||| || ||||  |||| |||||||||||||||||  ||||||||| | |||||||||||    
T  32764936 gagtaaatagtcactttagtccctgattctgcagctagttgtcatataggtctctgactcaggattaaatacaaataagtccctgactctgcacttccgt 32765035  T
Q  186 tatcacttta 195  Q
    ||||||||||    
T  32765036 tatcacttta 32765045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 148 - 197
Target Start/End: Original strand, 37607162 - 37607211
Alignment:
Q  148 gattaaatacaaagtagtccctgaatgtgcacttccgttatcactttagt 197  Q
    |||||||||||| ||||||| | |||||||||||||||||||||||||||    
T  37607162 gattaaatacaaggtagtcctttaatgtgcacttccgttatcactttagt 37607211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 133 - 197
Target Start/End: Original strand, 14704051 - 14704115
Alignment:
Q  133 aggttcctgattcaggattaaatacaaagtagtccctgaatgtgcacttccgttatcactttagt 197  Q
    |||| ||||| |||||||||||||||||  ||||||| | | |||||||||||||||||||||||    
T  14704051 aggtccctgactcaggattaaatacaaataagtccctcactctgcacttccgttatcactttagt 14704115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 144 - 196
Target Start/End: Original strand, 31442389 - 31442441
Alignment:
Q  144 tcaggattaaatacaaagtagtccctgaatgtgcacttccgttatcactttag 196  Q
    |||| ||||||||||||||||||| | |||||||||||||||||||| |||||    
T  31442389 tcagaattaaatacaaagtagtccataaatgtgcacttccgttatcagtttag 31442441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 86 - 198
Target Start/End: Original strand, 33439239 - 33439351
Alignment:
Q  86 gagtaaatggtcactttggttcctgactttgcacctcgcagtcttaaaggttcctgattcaggattaaatacaaagtagtccctgaatgtgcacttccgt 185  Q
    ||||||||||||||||||   ||||||| ||||| |||  ||| ||||||| | ||| ||| ||||||||| |||||||||  | ||||||||| ||| |    
T  33439239 gagtaaatggtcactttgaaccctgactctgcacatcgttgtcataaaggtacttgagtcatgattaaatataaagtagtcttttaatgtgcacctccat 33439338  T
Q  186 tatcactttagtt 198  Q
    ||||| |||||||    
T  33439339 tatcaatttagtt 33439351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 86 - 225
Target Start/End: Original strand, 5914303 - 5914441
Alignment:
Q  86 gagtaaatggtcactttggttcctgactttgcacctcgcagtcttaaaggttcctgattcaggattaaatacaaagtagtccctgaatgtgcacttccgt 185  Q
    ||||||||||||| ||| |||| |||||||||||||||  ||  || ||||  |||| |||  ||||||||||||| ||||  ||| | |||||| ||||    
T  5914303 gagtaaatggtcattttagttc-tgactttgcacctcgttgtgatataggtctctgactcacaattaaatacaaagaagtcagtgactttgcactcccgt 5914401  T
Q  186 tatcactttagttcataatgttaaatagttctggtaagtg 225  Q
    |||||||||||  ||| | |||||||| ||||| ||||||    
T  5914402 tatcactttagaccatgacgttaaataattctgttaagtg 5914441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 139 - 229
Target Start/End: Original strand, 7412143 - 7412233
Alignment:
Q  139 ctgattcaggattaaatacaaagtagtccctgaatgtgcacttccgttatcactttagttcataatgttaaatagttctggtaagtgatga 229  Q
    |||| ||| ||||||||| |||| |||| ||||  |||||||||||||||||||||||| | |||  ||||||| || || ||||||||||    
T  7412143 ctgactcaagattaaatataaagaagtcactgatagtgcacttccgttatcactttagtccctaacattaaataattatgttaagtgatga 7412233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 95 - 197
Target Start/End: Complemental strand, 24459562 - 24459460
Alignment:
Q  95 gtcactttggttcctgactttgcacctcgcagtcttaaaggttcctgattcaggattaaatacaaagtagtccctgaatgtgcacttccgttatcacttt 194  Q
    ||||||||||| ||||||| |||| ||||| |||  | |||| ||||| |||||||||||||||||  |||| ||||   ||||||||  ||||||||||    
T  24459562 gtcactttggtccctgactctgcatctcgctgtcacataggtccctgaatcaggattaaatacaaataagtctctgaccctgcacttctattatcacttt 24459463  T
Q  195 agt 197  Q
    |||    
T  24459462 agt 24459460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 90 - 195
Target Start/End: Complemental strand, 40000455 - 40000350
Alignment:
Q  90 aaatggtcactttggttcctgactttgcacctcgcagtcttaaaggttcctgattcaggattaaatacaaagtagtccctgaatgtgcacttccgttatc 189  Q
    |||| ||||||||||| ||||||| |||||||||| ||   | || | ||||||| |||||||||||||||  |||| || |   |||||||||||||||    
T  40000455 aaattgtcactttggtccctgactctgcacctcgctgttacatagatccctgattgaggattaaatacaaataagtctctaaccctgcacttccgttatc 40000356  T
Q  190 acttta 195  Q
    ||||||    
T  40000355 acttta 40000350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 137 - 197
Target Start/End: Complemental strand, 28864851 - 28864791
Alignment:
Q  137 tcctgattcaggattaaatacaaagtagtccctgaatgtgcacttccgttatcactttagt 197  Q
    ||||||||||  |||||||||||||||||| |||||| |||||||  ||||||| ||||||    
T  28864851 tcctgattcaatattaaatacaaagtagtctctgaatatgcacttttgttatcattttagt 28864791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 95 - 199
Target Start/End: Complemental strand, 34037789 - 34037685
Alignment:
Q  95 gtcactttggttcctgactttgcacctcgcagtcttaaaggttcctgattcaggattaaatacaaagtagtccctgaatgtgcacttccgttatcacttt 194  Q
    |||||||| || | ||||| ||||||| || ||| ||||||| | | | |||||||||||||||||  ||||  ||| | |||||||| |||||||||||    
T  34037789 gtcactttagtccttgactctgcaccttgctgtcataaaggtccataactcaggattaaatacaaataagtctatgactctgcacttctgttatcacttt 34037690  T
Q  195 agttc 199  Q
    |||||    
T  34037689 agttc 34037685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 149 - 197
Target Start/End: Complemental strand, 38985051 - 38985003
Alignment:
Q  149 attaaatacaaagtagtccctgaatgtgcacttccgttatcactttagt 197  Q
    ||||||||||||| ||||| ||| | |||||||||||||||||||||||    
T  38985051 attaaatacaaagaagtccttgactctgcacttccgttatcactttagt 38985003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 129 - 232
Target Start/End: Complemental strand, 31814426 - 31814323
Alignment:
Q  129 ttaaaggttcctgattcaggattaaatacaaagtagtccctgaatgtgcacttccgttatcactttagttcataatgttaaatagttctggtaagtgatg 228  Q
    ||||||||  |||| |||| |||||||| |||| |||   ||| | ||||||||||||||||||||||| | ||   ||||||| ||||| |||||||||    
T  31814426 ttaaaggtctctgactcagaattaaatataaagaagtttttgactctgcacttccgttatcactttagtccctagcattaaataattctgttaagtgatg 31814327  T
Q  229 atgt 232  Q
    ||||    
T  31814326 atgt 31814323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 144 - 197
Target Start/End: Original strand, 18675140 - 18675193
Alignment:
Q  144 tcaggattaaatacaaagtagtccctgaatgtgcacttccgttatcactttagt 197  Q
    |||| |||||||| ||| |||||| || |||||||||||| |||||||||||||    
T  18675140 tcagaattaaatataaaatagtccttggatgtgcacttccattatcactttagt 18675193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 144 - 176
Target Start/End: Complemental strand, 8420988 - 8420956
Alignment:
Q  144 tcaggattaaatacaaagtagtccctgaatgtg 176  Q
    ||||||||||||||||||||||| |||||||||    
T  8420988 tcaggattaaatacaaagtagtctctgaatgtg 8420956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 133 - 197
Target Start/End: Original strand, 17466086 - 17466150
Alignment:
Q  133 aggttcctgattcaggattaaatacaaagtagtccctgaatgtgcacttccgttatcactttagt 197  Q
    |||||| ||| ||||||||||||||||||   || |||| | |||||||||||| ||||||||||    
T  17466086 aggttcttgactcaggattaaatacaaagatatctctgactctgcacttccgttttcactttagt 17466150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 148 - 232
Target Start/End: Complemental strand, 21733834 - 21733750
Alignment:
Q  148 gattaaatacaaagtagtccctgaatgtgcacttccgttatcactttagttcataatgttaaatagttctggtaagtgatgatgt 232  Q
    |||||||||||||  |||| |||| | ||||||||||| ||||||||||||  |   |||||| | ||||| |||||||||||||    
T  21733834 gattaaatacaaataagtctctgactctgcacttccgtcatcactttagttgttgcagttaaaaaattctgttaagtgatgatgt 21733750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 86 - 197
Target Start/End: Original strand, 26585073 - 26585187
Alignment:
Q  86 gagtaaatggtcactttggttcctgactttgcacctcgcagtcttaaaggttcctgattcaggatta---aatacaaagtagtccctgaatgtgcacttc 182  Q
    |||||||||||||||||||||| ||| | |||| ||||| | |  |||||| ||||| ||| |||||   || | |||||||||  || |||| ||||||    
T  26585073 gagtaaatggtcactttggttcatgaatctgcatctcgctgccacaaaggtccctgactcaagattagataaaaaaaagtagtcattggatgtacacttc 26585172  T
Q  183 cgttatcactttagt 197  Q
     ||||||||||||||    
T  26585173 tgttatcactttagt 26585187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 149 - 197
Target Start/End: Complemental strand, 31443306 - 31443259
Alignment:
Q  149 attaaatacaaagtagtccctgaatgtgcacttccgttatcactttagt 197  Q
    |||||||||||||||||||||||| ||||||||  ||||||| ||||||    
T  31443306 attaaatacaaagtagtccctgaa-gtgcacttatgttatcagtttagt 31443259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 146 - 230
Target Start/End: Original strand, 33161825 - 33161909
Alignment:
Q  146 aggattaaatacaaagtagtccctgaatgtgcacttccgttatcactttagttcataatgttaaatagttctggtaagtgatgat 230  Q
    |||||||||| ||||| |||| | || | || |||||||||||||||||||| | | | |||||||| || || |||||||||||    
T  33161825 aggattaaatgcaaagaagtctcagactatgtacttccgttatcactttagtccttgacgttaaataattttgttaagtgatgat 33161909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 56; Significance: 2e-23; HSPs: 34)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 86 - 197
Target Start/End: Original strand, 48646047 - 48646158
Alignment:
Q  86 gagtaaatggtcactttggttcctgactttgcacctcgcagtcttaaaggttcctgattcaggattaaatacaaagtagtccctgaatgtgcacttccgt 185  Q
    |||||||| ||||||||||| ||||||| |||||||||| |||  | |||| ||||| |||||||||||||||||  ||||||||| | | |||||||||    
T  48646047 gagtaaatagtcactttggtccctgactatgcacctcgctgtcacataggtccctgactcaggattaaatacaaataagtccctgactctacacttccgt 48646146  T
Q  186 tatcactttagt 197  Q
    ||||||||||||    
T  48646147 tatcactttagt 48646158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 90 - 197
Target Start/End: Complemental strand, 8879665 - 8879557
Alignment:
Q  90 aaatggtcactttggttcctgactttgcacctcgcagtcttaaagg-ttcctgattcaggattaaatacaaagtagtccctgaatgtgcacttccgttat 188  Q
    ||||| ||| |||||| ||||||| ||||||| || ||| |||| | ||||||| |||||||||||||||||||||| |||||||||||| ||| |||||    
T  8879665 aaatgatcagtttggtccctgactctgcacctagctgtcataaaagcttcctgactcaggattaaatacaaagtagttcctgaatgtgcatttctgttat 8879566  T
Q  189 cactttagt 197  Q
    |||||||||    
T  8879565 cactttagt 8879557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 90 - 232
Target Start/End: Original strand, 43457459 - 43457601
Alignment:
Q  90 aaatggtcactttggttcctgactttgcacctcgcagtcttaaaggttcctgattcaggattaaatacaaagtagtccctgaatgtgcacttccgttatc 189  Q
    |||| |||||||| || ||||| | |||| ||||| |||  | |||| ||||| |||||||||||||||||  |||||| || | |||||||||||||||    
T  43457459 aaatagtcactttagtccctgattctgcagctcgctgtcgcataggtccctgactcaggattaaatacaaataagtccccgactctgcacttccgttatc 43457558  T
Q  190 actttagttcataatgttaaatagttctggtaagtgatgatgt 232  Q
    |||||||||||| | ||||| |  ||||| |||||||||||||    
T  43457559 actttagttcatgacgttaagttattctgttaagtgatgatgt 43457601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 133 - 232
Target Start/End: Complemental strand, 12223777 - 12223678
Alignment:
Q  133 aggttcctgattcaggattaaatacaaagtagtccctgaatgtgcacttccgttatcactttagttcataatgttaaatagttctggtaagtgatgatgt 232  Q
    |||| ||||| ||||||||||||| |||| ||||||||| | |||| ||||||||| ||||||||   | |||||||||| ||||| |||||||||||||    
T  12223777 aggtccctgactcaggattaaatataaagaagtccctgactctgcagttccgttattactttagtcactgatgttaaataattctgttaagtgatgatgt 12223678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 86 - 232
Target Start/End: Complemental strand, 10899198 - 10899052
Alignment:
Q  86 gagtaaatggtcactttggttcctgactttgcacctcgcagtcttaaaggttcctgattcaggattaaatacaaagtagtccctgaatgtgcacttccgt 185  Q
    |||||||| || |||||||| ||||||| |||||||||| |||  | || | | |||  ||||||||||||||||  |||| |||| | |||||||||||    
T  10899198 gagtaaattgttactttggtccctgactctgcacctcgctgtcacatagatccttgacccaggattaaatacaaataagtctctgactctgcacttccgt 10899099  T
Q  186 tatcactttagttcataatgttaaatagttctggtaagtgatgatgt 232  Q
    |||||||||||| | | | |||||| |  |||| |||||||||||||    
T  10899098 tatcactttagtccctgacgttaaaaaaatctgttaagtgatgatgt 10899052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 90 - 192
Target Start/End: Original strand, 44333141 - 44333243
Alignment:
Q  90 aaatggtcactttggttcctgactttgcacctcgcagtcttaaaggttcctgattcaggattaaatacaaagtagtccctgaatgtgcacttccgttatc 189  Q
    |||| ||||||||||| ||||||| |||||||||| |||  | |||| ||||| ||| |||||||||||||  |||| |||| | |||||||||||||||    
T  44333141 aaatagtcactttggtccctgactctgcacctcgctgtcacataggtccctgactcatgattaaatacaaataagtctctgactctgcacttccgttatc 44333240  T
Q  190 act 192  Q
    |||    
T  44333241 act 44333243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 139 - 232
Target Start/End: Complemental strand, 7259756 - 7259663
Alignment:
Q  139 ctgattcaggattaaatacaaagtagtccctgaatgtgcacttccgttatcactttagttcataatgttaaatagttctggtaagtgatgatgt 232  Q
    ||||||||||||||||||||||  ||||||||| | | ||||||||||||||||||||| | | | |||||| |  |||| |||||||||||||    
T  7259756 ctgattcaggattaaatacaaataagtccctgactctacacttccgttatcactttagtccctgacgttaaaaaaatctgttaagtgatgatgt 7259663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 90 - 167
Target Start/End: Original strand, 21062819 - 21062896
Alignment:
Q  90 aaatggtcactttggttcctgactttgcacctcgcagtcttaaaggttcctgattcaggattaaatacaaagtagtcc 167  Q
    ||||||||||||| || |||||||||||||||||| ||| ||||||| | ||| ||||||||||||||| || |||||    
T  21062819 aaatggtcactttagtccctgactttgcacctcgctgtcataaaggtccttgactcaggattaaatacatagaagtcc 21062896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 86 - 190
Target Start/End: Original strand, 22621126 - 22621229
Alignment:
Q  86 gagtaaatggtcactttggttcctgactttgcacctcgcagtcttaaaggttcctgattcaggattaaatacaaagtagtccctgaatgtgcacttccgt 185  Q
    ||||||||||||||||| || ||||| ||||||||||   ||| ||||||| | | | | | ||||||||| ||||||||||||||||||||||||| ||    
T  22621126 gagtaaatggtcactttagt-cctgattttgcacctctatgtcataaaggtccataacttaagattaaatataaagtagtccctgaatgtgcacttctgt 22621224  T
Q  186 tatca 190  Q
    |||||    
T  22621225 tatca 22621229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 144 - 195
Target Start/End: Complemental strand, 24288933 - 24288882
Alignment:
Q  144 tcaggattaaatacaaagtagtccctgaatgtgcacttccgttatcacttta 195  Q
    |||||||||| ||||||||||||| ||||||||||||||| |||||||||||    
T  24288933 tcaggattaattacaaagtagtccttgaatgtgcacttccattatcacttta 24288882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 90 - 232
Target Start/End: Original strand, 7258277 - 7258419
Alignment:
Q  90 aaatggtcactttggttcctgactttgcacctcgcagtcttaaaggttcctgattcaggattaaatacaaagtagtccctgaatgtgcacttccgttatc 189  Q
    |||| ||||||||||| ||||||| | |||||||  |||  | |||| ||| | |||||||||||||||||  |||| |||| | |||||||| ||||||    
T  7258277 aaatagtcactttggtccctgactctacacctcgttgtcacataggtccctaactcaggattaaatacaaataagtctctgactctgcacttctgttatc 7258376  T
Q  190 actttagttcataatgttaaatagttctggtaagtgatgatgt 232  Q
    |||||||| | | | |||||| |  |||| |||||||||||||    
T  7258377 actttagtccctgacgttaaaaaaatctgttaagtgatgatgt 7258419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 95 - 197
Target Start/End: Original strand, 35727706 - 35727808
Alignment:
Q  95 gtcactttggttcctgactttgcacctcgcagtcttaaaggttcctgattcaggattaaatacaaagtagtccctgaatgtgcacttccgttatcacttt 194  Q
    ||||||||| | ||||||| |||||||||| |||  | |||| ||||| ||||||||||||| |||  |||| |||| | ||||| ||||||||||||||    
T  35727706 gtcactttgatccctgactctgcacctcgctgtcacataggtccctgactcaggattaaatataaataagtctctgactctgcacatccgttatcacttt 35727805  T
Q  195 agt 197  Q
    |||    
T  35727806 agt 35727808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 144 - 197
Target Start/End: Original strand, 24844629 - 24844682
Alignment:
Q  144 tcaggattaaatacaaagtagtccctgaatgtgcacttccgttatcactttagt 197  Q
    |||||||||||||||||||||||  ||||||||||||||| |||||| ||||||    
T  24844629 tcaggattaaatacaaagtagtcattgaatgtgcacttccattatcagtttagt 24844682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 140 - 197
Target Start/End: Complemental strand, 25621792 - 25621735
Alignment:
Q  140 tgattcaggattaaatacaaagtagtccctgaatgtgcacttccgttatcactttagt 197  Q
    ||||||||||||||||||||| ||||   |||||||||||||| ||||||||||||||    
T  25621792 tgattcaggattaaatacaaattagtttttgaatgtgcacttctgttatcactttagt 25621735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 139 - 196
Target Start/End: Complemental strand, 33607695 - 33607638
Alignment:
Q  139 ctgattcaggattaaatacaaagtagtccctgaatgtgcacttccgttatcactttag 196  Q
    ||||||||||||||||||||||| |||| |||| | |||||||||||||||| |||||    
T  33607695 ctgattcaggattaaatacaaagaagtctctgattctgcacttccgttatcattttag 33607638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 108 - 232
Target Start/End: Complemental strand, 8048887 - 8048763
Alignment:
Q  108 ctgactttgcacctcgcagtcttaaaggttcctgattcaggattaaatacaaagtagtccctgaatgtgcacttccgttatcactttagttcataatgtt 207  Q
    |||||| |||||||||| | |  ||||||  |||| ||| |||||||||||||| |||| | || | ||||||||||||||||||||| |   ||| |||    
T  8048887 ctgactctgcacctcgctgacacaaaggtctctgactcaagattaaatacaaagaagtctccgactctgcacttccgttatcactttaatctttaacgtt 8048788  T
Q  208 aaatagttctggtaagtgatgatgt 232  Q
    ||||| ||||  |||||||||||||    
T  8048787 aaataattctattaagtgatgatgt 8048763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 85 - 197
Target Start/End: Complemental strand, 48788798 - 48788686
Alignment:
Q  85 cgagtaaatggtcactttggttcctgactttgcacctcgcagtcttaaaggttcctgattcaggattaaatacaaagtagtccctgaatgtgcacttccg 184  Q
    |||| |||| ||||||||| | | |||||||||||||||| |||  | |||| ||||| |||  |||||||| |||  |||| |||| | ||||||||||    
T  48788798 cgagcaaatagtcactttgatccttgactttgcacctcgctgtcacataggtccctgactcataattaaatataaataagtctctgactctgcacttccg 48788699  T
Q  185 ttatcactttagt 197  Q
    |||||||||||||    
T  48788698 ttatcactttagt 48788686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 86 - 197
Target Start/End: Complemental strand, 2677911 - 2677800
Alignment:
Q  86 gagtaaatggtcactttggttcctgactttgcacctcgcagtcttaaaggttcctgattcaggattaaatacaaagtagtccctgaatgtgcacttccgt 185  Q
    |||||||||||||| |||||   ||||| || ||||||  |||  ||||||   ||| ||| |||||||||||||||| ||||| ||||||||||| |||    
T  2677911 gagtaaatggtcaccttggtctttgactctgtacctcgttgtcacaaaggtctatgactcatgattaaatacaaagtattccctaaatgtgcactttcgt 2677812  T
Q  186 tatcactttagt 197  Q
    ||||| ||||||    
T  2677811 tatcagtttagt 2677800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 117 - 232
Target Start/End: Complemental strand, 13578414 - 13578300
Alignment:
Q  117 cacctcgcagtcttaaaggttcctgattcaggattaaatacaaagtagtccctgaatgtgcacttccgttatcactttagttcataatgttaaatagttc 216  Q
    |||||||| ||| ||||| |  |||| |||| ||||||||||||  |||| |||| | |||||||||||||||||||||| || | | |||||||| ||     
T  13578414 cacctcgctgtcataaagatcactgactcagaattaaatacaaataagtcactgactctgcacttccgttatcactttag-tcctgacgttaaataatta 13578316  T
Q  217 tggtaagtgatgatgt 232  Q
    || |||||||||||||    
T  13578315 tgttaagtgatgatgt 13578300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 86 - 181
Target Start/End: Original strand, 24934802 - 24934897
Alignment:
Q  86 gagtaaatggtcactttggttcctgactttgcacctcgcagtcttaaaggttcctgattcaggattaaatacaaagtagtccctgaatgtgcactt 181  Q
    |||||||||||||||||||| ||| ||| ||||  |||| |||  ||||||  |||| | ||||||||||||||| |||||  |||||||||||||    
T  24934802 gagtaaatggtcactttggtccctaactctgcatatcgctgtcacaaaggtctctgacttaggattaaatacaaaatagtcattgaatgtgcactt 24934897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 147 - 197
Target Start/End: Original strand, 27067841 - 27067891
Alignment:
Q  147 ggattaaatacaaagtagtccctgaatgtgcacttccgttatcactttagt 197  Q
    ||||||||  ||||||||||||||||||||||||| | |||||||||||||    
T  27067841 ggattaaaagcaaagtagtccctgaatgtgcactttcattatcactttagt 27067891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 147 - 197
Target Start/End: Complemental strand, 27210472 - 27210422
Alignment:
Q  147 ggattaaatacaaagtagtccctgaatgtgcacttccgttatcactttagt 197  Q
    ||||||||  ||||||||||||||||||||||||| | |||||||||||||    
T  27210472 ggattaaaagcaaagtagtccctgaatgtgcactttcattatcactttagt 27210422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 95 - 212
Target Start/End: Original strand, 39708110 - 39708227
Alignment:
Q  95 gtcactttggttcctgactttgcacctcgcagtcttaaaggttcctgattcaggattaaatacaaagtagtccctgaatgtgcacttccgttatcacttt 194  Q
    |||||||| ||  |||||| || ||||||| |||  |||||| | ||| ||| |||| ||||||||| |||| | || | ||||||||||||||||||||    
T  39708110 gtcactttagtctctgactctgtacctcgccgtcacaaaggtccatgactcaagattgaatacaaagaagtcaccgactttgcacttccgttatcacttt 39708209  T
Q  195 agttcataatgttaaata 212  Q
    ||| | | ||||||||||    
T  39708210 agtccgtgatgttaaata 39708227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 90 - 195
Target Start/End: Original strand, 46286505 - 46286610
Alignment:
Q  90 aaatggtcactttggttcctgactttgcacctcgcagtcttaaaggttcctgattcaggattaaatacaaagtagtccctgaatgtgcacttccgttatc 189  Q
    |||| |||||||| || ||||||| | || ||||| ||   |||||| ||||| |||||||||||||||||  |||| |||| | |||||||| ||||||    
T  46286505 aaatagtcactttagtccctgactcttcatctcgctgttagaaaggtccctgactcaggattaaatacaaataagtctctgactctgcacttctgttatc 46286604  T
Q  190 acttta 195  Q
    ||||||    
T  46286605 acttta 46286610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 90 - 197
Target Start/End: Original strand, 8374916 - 8375023
Alignment:
Q  90 aaatggtcactttggttcctgactttgcacctcgcagtcttaaaggttcctgattcaggattaaatacaaagtagtccctgaatgtgcacttccgttatc 189  Q
    ||||||| | ||| || ||||||| |||||||||| |||  | ||||  |||| |||| ||||||||||||  |||  |||| | |||||||||||||||    
T  8374916 aaatggtgattttagtccctgactctgcacctcgctgtcacataggtctctgactcagaattaaatacaaaaaagtttctgattttgcacttccgttatc 8375015  T
Q  190 actttagt 197  Q
    ||||||||    
T  8375016 actttagt 8375023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 149 - 232
Target Start/End: Original strand, 33060871 - 33060954
Alignment:
Q  149 attaaatacaaagtagtccctgaatgtgcacttccgttatcactttagttcataatgttaaatagttctggtaagtgatgatgt 232  Q
    |||||||||||| || | | ||||||| |||||||||||||||||||||   | | |||||||| ||||| ||| |||||||||    
T  33060871 attaaatacaaaatacttcatgaatgtacacttccgttatcactttagtctctgacgttaaataattctgttaaatgatgatgt 33060954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 90 - 197
Target Start/End: Complemental strand, 44334570 - 44334463
Alignment:
Q  90 aaatggtcactttggttcctgactttgcacctcgcagtcttaaaggttcctgattcaggattaaatacaaagtagtccctgaatgtgcacttccgttatc 189  Q
    |||| |||||||| |||||||| | |||| ||||| ||   | |||| ||||| ||| ||||||||| |||  ||||||||| | ||||||||| |||||    
T  44334570 aaatagtcactttagttcctgattctgcagctcgctgttacataggtccctgactcatgattaaatataaataagtccctgactctgcacttccattatc 44334471  T
Q  190 actttagt 197  Q
    ||||||||    
T  44334470 actttagt 44334463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 138 - 197
Target Start/End: Original strand, 48777306 - 48777365
Alignment:
Q  138 cctgattcaggattaaatacaaagtagtccctgaatgtgcacttccgttatcactttagt 197  Q
    ||||| ||| |||||||||||||  | ||||||| | |||||||||||||||||||||||    
T  48777306 cctgactcatgattaaatacaaataattccctgactctgcacttccgttatcactttagt 48777365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 131 - 232
Target Start/End: Original strand, 12220066 - 12220166
Alignment:
Q  131 aaaggttcctgattcaggattaaatacaaagtagtccctgaatgtgcacttccgttatcactttagttcataatgttaaatagttctggtaagtgatgat 230  Q
    |||| ||||||| ||| ||||||||| |||| |||| |||| | |||||||| | ||||||||||| || | | |||||||| || || |||||||||||    
T  12220066 aaagattcctgactcaagattaaatagaaagaagtctctgactctgcacttctgatatcactttag-tcttgacgttaaataattttgttaagtgatgat 12220164  T
Q  231 gt 232  Q
    ||    
T  12220165 gt 12220166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 144 - 197
Target Start/End: Complemental strand, 30925075 - 30925022
Alignment:
Q  144 tcaggattaaatacaaagtagtccctgaatgtgcacttccgttatcactttagt 197  Q
    |||||||||||||||||  |||| |||| | |||||||||||||| ||||||||    
T  30925075 tcaggattaaatacaaataagtctctgactatgcacttccgttattactttagt 30925022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 144 - 197
Target Start/End: Complemental strand, 44530678 - 44530625
Alignment:
Q  144 tcaggattaaatacaaagtagtccctgaatgtgcacttccgttatcactttagt 197  Q
    ||||||||||||| |||  |||| |||| | |||||||||||||||||||||||    
T  44530678 tcaggattaaatataaataagtctctgactctgcacttccgttatcactttagt 44530625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 133 - 197
Target Start/End: Complemental strand, 8375661 - 8375597
Alignment:
Q  133 aggttcctgattcaggattaaatacaaagtagtccctgaatgtgcacttccgttatcactttagt 197  Q
    |||| ||||| ||| |||||||||||||| |||  |||| | |||||||||||||||| ||||||    
T  8375661 aggtccctgactcatgattaaatacaaagaagtttctgactctgcacttccgttatcaatttagt 8375597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 151 - 195
Target Start/End: Original strand, 30917776 - 30917820
Alignment:
Q  151 taaatacaaagtagtccctgaatgtgcacttccgttatcacttta 195  Q
    ||||||| |||||||  |||||||||||||||| |||||||||||    
T  30917776 taaatacgaagtagtttctgaatgtgcacttccattatcacttta 30917820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 144 - 232
Target Start/End: Complemental strand, 45584563 - 45584475
Alignment:
Q  144 tcaggattaaatacaaagtagtccctgaatgtgcacttccgttatcactttagttcataatgttaaatagttctggtaagtgatgatgt 232  Q
    |||||||||||||||||  || |  ||| | ||||||||||||||||||||||| | | | |||||| |  |||| |||||||||||||    
T  45584563 tcaggattaaatacaaataagccaatgactctgcacttccgttatcactttagtccctgacgttaaaaaaatctgttaagtgatgatgt 45584475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 56; Significance: 2e-23; HSPs: 24)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 86 - 197
Target Start/End: Original strand, 8975157 - 8975268
Alignment:
Q  86 gagtaaatggtcactttggttcctgactttgcacctcgcagtcttaaaggttcctgattcaggattaaatacaaagtagtccctgaatgtgcacttccgt 185  Q
    |||||||||||||||||||| ||| ||||||||||| |  |||  |||||| ||||| ||| ||||||||| |||||||||| ||||| ||||||| |||    
T  8975157 gagtaaatggtcactttggtccctaactttgcaccttgttgtcacaaaggtccctgactcaagattaaatataaagtagtccatgaatatgcactttcgt 8975256  T
Q  186 tatcactttagt 197  Q
    ||||||||||||    
T  8975257 tatcactttagt 8975268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 131 - 197
Target Start/End: Complemental strand, 50107283 - 50107217
Alignment:
Q  131 aaaggttcctgattcaggattaaatacaaagtagtccctgaatgtgcacttccgttatcactttagt 197  Q
    ||||||| |||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||    
T  50107283 aaaggttactgattcaggattaaatacaaaatagtctctgaatgtgcacttccgttatcactttagt 50107217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 86 - 197
Target Start/End: Complemental strand, 11060909 - 11060798
Alignment:
Q  86 gagtaaatggtcactttggttcctgactttgcacctcgcagtcttaaaggttcctgattcaggattaaatacaaagtagtccctgaatgtgcacttccgt 185  Q
    |||||||||||||||||| | | ||||| |||||||||| |||  |||||| | ||| |||  |||||||||||| ||||||||||||| |||||| |||    
T  11060909 gagtaaatggtcactttgatccttgactatgcacctcgctgtcacaaaggtccatgactcaaaattaaatacaaaatagtccctgaatgggcactttcgt 11060810  T
Q  186 tatcactttagt 197  Q
    ||||||||||||    
T  11060809 tatcactttagt 11060798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 100 - 197
Target Start/End: Complemental strand, 7945665 - 7945568
Alignment:
Q  100 tttggttcctgactttgcacctcgcagtcttaaaggttcctgattcaggattaaatacaaagtagtccctgaatgtgcacttccgttatcactttagt 197  Q
    |||||| ||||||| |||||||||| |||  | |||||||||| |||||||||||||||||  |||| |||| | |||||||||||||||||||||||    
T  7945665 tttggtccctgactctgcacctcgctgtcacataggttcctgactcaggattaaatacaaataagtctctgactatgcacttccgttatcactttagt 7945568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 87 - 197
Target Start/End: Original strand, 1001153 - 1001263
Alignment:
Q  87 agtaaatggtcactttggttcctgactttgcacctcgcagtcttaaaggttcctgattcaggattaaatacaaagtagtccctgaatgtgcacttccgtt 186  Q
    |||||||| | ||||| || | |||||||||||||||  | |  |||||| | ||| || |||||||||||||||||||| ||||||||||||||| |||    
T  1001153 agtaaatgataactttagtccatgactttgcacctcgttgccacaaaggtccatgactcgggattaaatacaaagtagtctctgaatgtgcacttctgtt 1001252  T
Q  187 atcactttagt 197  Q
    |||| ||||||    
T  1001253 atcagtttagt 1001263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 90 - 230
Target Start/End: Original strand, 10332988 - 10333128
Alignment:
Q  90 aaatggtcactttggttcctgactttgcacctcgcagtcttaaaggttcctgattcaggattaaatacaaagtagtccctgaatgtgcacttccgttatc 189  Q
    |||| |||||||| || |||||||||||||||||  |||  | |||| | ||||||||||||||||| |||  ||||||| | | |||||||||||||||    
T  10332988 aaatagtcactttagtccctgactttgcacctcgttgtcacataggtccttgattcaggattaaatataaataagtcccttactctgcacttccgttatc 10333087  T
Q  190 actttagttcataatgttaaatagttctggtaagtgatgat 230  Q
    | |||||| | | | |||||| |  |||| |||||||||||    
T  10333088 attttagtccttgacgttaaaaaaatctgttaagtgatgat 10333128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 90 - 197
Target Start/End: Original strand, 5782416 - 5782523
Alignment:
Q  90 aaatggtcactttggttcctgactttgcacctcgcagtcttaaaggttcctgattcaggattaaatacaaagtagtccctgaatgtgcacttccgttatc 189  Q
    |||| |||| ||| || ||||||| |||||||||| |||  | ||||  |||| ||| |||||||||||||| |||| |||| | ||||||||| |||||    
T  5782416 aaattgtcattttagtccctgactctgcacctcgctgtcacataggtctctgactcatgattaaatacaaagaagtctctgattatgcacttcccttatc 5782515  T
Q  190 actttagt 197  Q
    ||||||||    
T  5782516 actttagt 5782523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 133 - 232
Target Start/End: Original strand, 9339691 - 9339790
Alignment:
Q  133 aggttcctgattcaggattaaatacaaagtagtccctgaatgtgcacttccgttatcactttagttcataatgttaaatagttctggtaagtgatgatgt 232  Q
    |||| ||||| |||||||||||||||||  | |||| || | ||||||||||||||||||||||| | | | |||||| |  |||| |||||||||||||    
T  9339691 aggtccctgactcaggattaaatacaaataaatccccgactctgcacttccgttatcactttagtccctgacgttaaaaaaatctgttaagtgatgatgt 9339790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 90 - 197
Target Start/End: Original strand, 22856682 - 22856789
Alignment:
Q  90 aaatggtcactttggttcctgactttgcacctcgcagtcttaaaggttcctgattcaggattaaatacaaagtagtccctgaatgtgcacttccgttatc 189  Q
    ||||||||||||| ||  |||||| |||||| ||  ||   |||| ||| ||| |||||||||||||||||| |||| || | | |||||||||||||||    
T  22856682 aaatggtcactttagtcactgactctgcaccacgttgttacaaagattcttgactcaggattaaatacaaagaagtctctaactctgcacttccgttatc 22856781  T
Q  190 actttagt 197  Q
    ||||||||    
T  22856782 actttagt 22856789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 86 - 197
Target Start/End: Original strand, 44719348 - 44719459
Alignment:
Q  86 gagtaaatggtcactttggttcctgactttgcacctcgcagtcttaaaggttcctgattcaggattaaatacaaagtagtccctgaatgtgcacttccgt 185  Q
    |||||||||||||||||| | | |||||||||| ||||  |||  |||| |  || | ||||||||||||| ||||||||   ||||| |||||||||||    
T  44719348 gagtaaatggtcactttgatccttgactttgcatctcgttgtcacaaagatctctaactcaggattaaatataaagtagtttatgaatatgcacttccgt 44719447  T
Q  186 tatcactttagt 197  Q
    ||||| ||||||    
T  44719448 tatcattttagt 44719459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 90 - 232
Target Start/End: Original strand, 6612421 - 6612563
Alignment:
Q  90 aaatggtcactttggttcctgactttgcacctcgcagtcttaaaggttcctgattcaggattaaatacaaagtagtccctgaatgtgcacttccgttatc 189  Q
    |||| |||||||| || ||||||| |||||||||| ||  |||| ||  |||| ||| |||||||||||||  |||| |||| | ||||||||| |||||    
T  6612421 aaatagtcactttagtccctgactctgcacctcgctgttataaatgtctctgactcatgattaaatacaaacaagtctctgactctgcacttccattatc 6612520  T
Q  190 actttagttcataatgttaaatagttctggtaagtgatgatgt 232  Q
    |||||| | | | | |||||||| || || |||||||| ||||    
T  6612521 actttaatccctgacgttaaataattttgttaagtgattatgt 6612563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 139 - 197
Target Start/End: Original strand, 26518160 - 26518218
Alignment:
Q  139 ctgattcaggattaaatacaaagtagtccctgaatgtgcacttccgttatcactttagt 197  Q
    |||| ||| |||||||||||||||||| | |||||||||| ||||||||||| ||||||    
T  26518160 ctgactcaagattaaatacaaagtagttcatgaatgtgcagttccgttatcaatttagt 26518218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 144 - 197
Target Start/End: Complemental strand, 5783176 - 5783123
Alignment:
Q  144 tcaggattaaatacaaagtagtccctgaatgtgcacttccgttatcactttagt 197  Q
    |||| ||||||||||||| ||||| ||| | |||||||||||||||||||||||    
T  5783176 tcagaattaaatacaaagaagtccatgactctgcacttccgttatcactttagt 5783123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 175 - 232
Target Start/End: Complemental strand, 22857615 - 22857558
Alignment:
Q  175 tgcacttccgttatcactttagttcataatgttaaatagttctggtaagtgatgatgt 232  Q
    ||||||||||||||||||||||| ||| | |||||||| || || |||||||||||||    
T  22857615 tgcacttccgttatcactttagtccatgacgttaaataattatgttaagtgatgatgt 22857558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 139 - 232
Target Start/End: Original strand, 33342467 - 33342560
Alignment:
Q  139 ctgattcaggattaaatacaaagtagtccctgaatgtgcacttccgttatcactttagttcataatgttaaatagttctggtaagtgatgatgt 232  Q
    ||||||||| |||||| ||||| |||| | ||||||||||| | |||||||||||||||   | | |||||||| || || |||||||||||||    
T  33342467 ctgattcagaattaaagacaaaatagttcatgaatgtgcacatacgttatcactttagtctctgacgttaaataattatgttaagtgatgatgt 33342560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 108 - 197
Target Start/End: Complemental strand, 52440662 - 52440573
Alignment:
Q  108 ctgactttgcacctcgcagtcttaaaggttcctgattcaggattaaatacaaagtagtccctgaatgtgcacttccgttatcactttagt 197  Q
    |||||||||||| |||| |||  | |||| ||||| ||||||||||||| |||  |||| |||| | ||||||||| |||||||||||||    
T  52440662 ctgactttgcacatcgctgtcacataggtccctgagtcaggattaaatataaataagtctctgactctgcacttccattatcactttagt 52440573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 133 - 197
Target Start/End: Complemental strand, 9341103 - 9341039
Alignment:
Q  133 aggttcctgattcaggattaaatacaaagtagtccctgaatgtgcacttccgttatcactttagt 197  Q
    |||| ||||| |||||||||||||||||  |||| |||| | |||||||| ||||||||||||||    
T  9341103 aggtccctgactcaggattaaatacaaataagtctctgactttgcacttctgttatcactttagt 9341039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 86 - 186
Target Start/End: Complemental strand, 18898015 - 18897915
Alignment:
Q  86 gagtaaatggtcactttggttcctgactttgcacctcgcagtcttaaaggttcctgattcaggattaaatacaaagtagtccctgaatgtgcacttccgt 185  Q
    |||||||||||||||||| ||| ||||| |||| |||   |||  ||||||  |||| ||||||||||||| ||||| |||  ||||||||||||| |||    
T  18898015 gagtaaatggtcactttgattcttgactctgcaactcattgtcacaaaggtctctgactcaggattaaatataaagttgtctttgaatgtgcacttacgt 18897916  T
Q  186 t 186  Q
    |    
T  18897915 t 18897915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 83 - 195
Target Start/End: Complemental strand, 26519230 - 26519118
Alignment:
Q  83 ttcgagtaaatggtcactttggttcctgactttgcacctcgcagtcttaaaggttcctgattcaggattaaatacaaagtagtccctgaatgtgcacttc 182  Q
    |||||| |||||||||||||||| | ||||| |  | ||||  ||| ||||||| ||| | || || |||||||||||||||||  |||||||||||||     
T  26519230 ttcgagcaaatggtcactttggtccttgactctaaatctcgttgtcataaaggtccctaactccgggttaaatacaaagtagtctttgaatgtgcacttt 26519131  T
Q  183 cgttatcacttta 195  Q
     ||||||| ||||    
T  26519130 tgttatcagttta 26519118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 139 - 197
Target Start/End: Complemental strand, 10333258 - 10333200
Alignment:
Q  139 ctgattcaggattaaatacaaagtagtccctgaatgtgcacttccgttatcactttagt 197  Q
    |||| ||| |||||||||||||  |||| |||| | |||||||||||||||||||||||    
T  10333258 ctgactcaagattaaatacaaataagtctctgactctgcacttccgttatcactttagt 10333200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 158 - 232
Target Start/End: Original strand, 29765993 - 29766067
Alignment:
Q  158 aaagtagtccctgaatgtgcacttccgttatcactttagttcataatgttaaatagttctggtaagtgatgatgt 232  Q
    |||||||||  || ||||||||||| ||||||||||||||  ||| ||||||||| || || ||| |||||||||    
T  29765993 aaagtagtctatggatgtgcacttctgttatcactttagtctatagtgttaaataattttgttaattgatgatgt 29766067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 138 - 198
Target Start/End: Original strand, 25037928 - 25037988
Alignment:
Q  138 cctgattcaggattaaatacaaagtagtccctgaatgtgcacttccgttatcactttagtt 198  Q
    ||||| ||| |||||||||||||| |||| |||| | || |||| ||||||||||||||||    
T  25037928 cctgactcatgattaaatacaaagaagtcactgactctggacttacgttatcactttagtt 25037988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 138 - 198
Target Start/End: Original strand, 25043140 - 25043200
Alignment:
Q  138 cctgattcaggattaaatacaaagtagtccctgaatgtgcacttccgttatcactttagtt 198  Q
    ||||| ||| |||||||||||||| |||| |||| | || |||| ||||||||||||||||    
T  25043140 cctgactcatgattaaatacaaagaagtcactgactctggacttacgttatcactttagtt 25043200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 165 - 197
Target Start/End: Complemental strand, 44720895 - 44720863
Alignment:
Q  165 tccctgaatgtgcacttccgttatcactttagt 197  Q
    ||||||||||||||||||| |||||||||||||    
T  44720895 tccctgaatgtgcacttccattatcactttagt 44720863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 55; Significance: 1e-22; HSPs: 21)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 83 - 197
Target Start/End: Complemental strand, 35178932 - 35178818
Alignment:
Q  83 ttcgagtaaatggtcactttggttcctgactttgcacctcgcagtcttaaaggttcctgattcaggattaaatacaaagtagtccctgaatgtgcacttc 182  Q
    |||||| |||| ||||||||||| ||||||| ||||| |||| ||| ||  ||| ||||| |||||||||||||||||  ||||||||| | ||||||||    
T  35178932 ttcgagcaaatagtcactttggtccctgactctgcacatcgctgtcatattggtccctgactcaggattaaatacaaataagtccctgattctgcacttc 35178833  T
Q  183 cgttatcactttagt 197  Q
    |||||||||||||||    
T  35178832 cgttatcactttagt 35178818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 131 - 197
Target Start/End: Complemental strand, 12637838 - 12637772
Alignment:
Q  131 aaaggttcctgattcaggattaaatacaaagtagtccctgaatgtgcacttccgttatcactttagt 197  Q
    |||||| ||| | |||||||| ||||||||||||| |||||||||||||||||||||||||||||||    
T  12637838 aaaggtccctaactcaggattgaatacaaagtagttcctgaatgtgcacttccgttatcactttagt 12637772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 140 - 197
Target Start/End: Original strand, 24198986 - 24199043
Alignment:
Q  140 tgattcaggattaaatacaaagtagtccctgaatgtgcacttccgttatcactttagt 197  Q
    |||||||||||||||||||||||| ||  |||||||||||||||||||||||||||||    
T  24198986 tgattcaggattaaatacaaagtaatcattgaatgtgcacttccgttatcactttagt 24199043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 131 - 195
Target Start/End: Complemental strand, 28006675 - 28006611
Alignment:
Q  131 aaaggttcctgattcaggattaaatacaaagtagtccctgaatgtgcacttccgttatcacttta 195  Q
    |||||||||||| |||| |||||||| |||||||||| |||||||| ||||||||||||||||||    
T  28006675 aaaggttcctgaatcagaattaaatataaagtagtccttgaatgtgtacttccgttatcacttta 28006611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 131 - 195
Target Start/End: Complemental strand, 28063978 - 28063914
Alignment:
Q  131 aaaggttcctgattcaggattaaatacaaagtagtccctgaatgtgcacttccgttatcacttta 195  Q
    |||||||||||| |||| |||||||| |||||||||| |||||||| ||||||||||||||||||    
T  28063978 aaaggttcctgaatcagaattaaatataaagtagtccttgaatgtgtacttccgttatcacttta 28063914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 90 - 232
Target Start/End: Complemental strand, 32898566 - 32898424
Alignment:
Q  90 aaatggtcactttggttcctgactttgcacctcgcagtcttaaaggttcctgattcaggattaaatacaaagtagtccctgaatgtgcacttccgttatc 189  Q
    |||| |||||||| || ||||||| |||| ||| | |||  | |||| ||||| | |||||||||||||||  ||||||||| | |||||||||||||||    
T  32898566 aaatagtcactttagtccctgactctgcaactcactgtcacataggtccctgacttaggattaaatacaaataagtccctgactctgcacttccgttatc 32898467  T
Q  190 actttagttcataatgttaaatagttctggtaagtgatgatgt 232  Q
    |||||||| | | | |||||| |  |||| |||||||||||||    
T  32898466 actttagtccctgacgttaaaaaaatctgttaagtgatgatgt 32898424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 144 - 197
Target Start/End: Original strand, 28524814 - 28524867
Alignment:
Q  144 tcaggattaaatacaaagtagtccctgaatgtgcacttccgttatcactttagt 197  Q
    |||||||||||||||||||| ||| |||||||||||||||||||||| ||||||    
T  28524814 tcaggattaaatacaaagtaatccttgaatgtgcacttccgttatcattttagt 28524867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 89 - 197
Target Start/End: Original strand, 28005345 - 28005452
Alignment:
Q  89 taaatggtcactttggttcctgactttgcacctcgcagtcttaaaggttcctgattcaggattaaatacaaagtagtccctgaatgtgcacttccgttat 188  Q
    ||||||||||||| ||| ||||||| | |||||||  |||  |||| | ||||| ||||||| ||||||||||||||||| |||||||| |||  | |||    
T  28005345 taaatggtcactt-ggtccctgactctacacctcgttgtcacaaagatccctgactcaggatcaaatacaaagtagtccccgaatgtgctcttatgatat 28005443  T
Q  189 cactttagt 197  Q
    |||||||||    
T  28005444 cactttagt 28005452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 89 - 197
Target Start/End: Original strand, 28062648 - 28062755
Alignment:
Q  89 taaatggtcactttggttcctgactttgcacctcgcagtcttaaaggttcctgattcaggattaaatacaaagtagtccctgaatgtgcacttccgttat 188  Q
    ||||||||||||| ||| ||||||| | |||||||  |||  |||| | ||||| ||||||| ||||||||||||||||| |||||||| |||  | |||    
T  28062648 taaatggtcactt-ggtccctgactctacacctcgttgtcacaaagatccctgactcaggatcaaatacaaagtagtccccgaatgtgctcttatgatat 28062746  T
Q  189 cactttagt 197  Q
    |||||||||    
T  28062747 cactttagt 28062755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 133 - 197
Target Start/End: Original strand, 35177440 - 35177504
Alignment:
Q  133 aggttcctgattcaggattaaatacaaagtagtccctgaatgtgcacttccgttatcactttagt 197  Q
    |||| ||||| || ||||||||||||||  ||||||||| | |||||||||||||||||||||||    
T  35177440 aggtccctgactccggattaaatacaaataagtccctgactctgcacttccgttatcactttagt 35177504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 138 - 197
Target Start/End: Complemental strand, 5965515 - 5965456
Alignment:
Q  138 cctgattcaggattaaatacaaagtagtccctgaatgtgcacttccgttatcactttagt 197  Q
    ||||| |||||||||||||||||| ||||  ||| | |||||||||||||||||||||||    
T  5965515 cctgactcaggattaaatacaaagaagtctttgactctgcacttccgttatcactttagt 5965456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 87 - 198
Target Start/End: Complemental strand, 9626584 - 9626473
Alignment:
Q  87 agtaaatggtcactttggttcctgactttgcacctcgcagtcttaaaggttcctgattcaggattaaatacaaagtagtccctgaatgtgcacttccgtt 186  Q
    ||||||||||||||||||| ||| ||| | ||| |||| ||| |||| ||   ||| |||| ||||||||||| ||||||  ||||| ||| ||||||||    
T  9626584 agtaaatggtcactttggtccctaactatacacttcgctgtcataaatgtcattgactcagaattaaatacaatgtagtcattgaatatgcgcttccgtt 9626485  T
Q  187 atcactttagtt 198  Q
    || |||||||||    
T  9626484 attactttagtt 9626473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 86 - 197
Target Start/End: Original strand, 31073992 - 31074103
Alignment:
Q  86 gagtaaatggtcactttggttcctgactttgcacctcgcagtcttaaaggttcctgattcaggattaaatacaaagtagtccctgaatgtgcacttccgt 185  Q
    ||||||||||| |||||  | ||||||| |||| || || |||  ||| ||  |||| || ||||||||| |||||||||  ||||||||||||||| ||    
T  31073992 gagtaaatggttactttaatccctgactctgcatcttgctgtcacaaaagtctctgactctggattaaatgcaaagtagtttctgaatgtgcacttctgt 31074091  T
Q  186 tatcactttagt 197  Q
    ||||||||||||    
T  31074092 tatcactttagt 31074103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 86 - 197
Target Start/End: Complemental strand, 31075414 - 31075304
Alignment:
Q  86 gagtaaatggtcactttggttcctgactttgcacctcgcagtcttaaaggttcctgattcaggattaaatacaaagtagtccctgaatgtgcacttccgt 185  Q
    ||||||||||||| ||||||  |||||| |||||||||  ||   |||||||| ||  |||| |||||||||||| |||| ||||||| || ||| ||||    
T  31075414 gagtaaatggtcaatttggtctctgactctgcacctcgttgttacaaaggttcttggctcagcattaaatacaaaatagt-cctgaatatgtactcccgt 31075316  T
Q  186 tatcactttagt 197  Q
    ||||||||||||    
T  31075315 tatcactttagt 31075304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 121 - 193
Target Start/End: Original strand, 41121142 - 41121214
Alignment:
Q  121 tcgcagtcttaaaggttcctgattcaggattaaatacaaagtagtccctgaatgtgcacttccgttatcactt 193  Q
    |||| |||||||||||| |||| ||| |||||||||||||| |||| |||| | ||||||||  |||||||||    
T  41121142 tcgctgtcttaaaggttactgactcatgattaaatacaaagaagtctctgactatgcacttctattatcactt 41121214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 146 - 197
Target Start/End: Original strand, 9625248 - 9625299
Alignment:
Q  146 aggattaaatacaaagtagtccctgaatgtgcacttccgttatcactttagt 197  Q
    ||||||||| |||||||||| | ||||| ||||||||| |||||||||||||    
T  9625248 aggattaaacacaaagtagtacttgaatatgcacttccattatcactttagt 9625299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 146 - 232
Target Start/End: Complemental strand, 10407649 - 10407563
Alignment:
Q  146 aggattaaatacaaagtagtccctgaatgtgcacttccgttatcactttagttcataatgttaaatagttctggtaagtgatgatgt 232  Q
    ||||||||| |||||  ||||| | | | ||||||||||||||||||||||||| | | |||||| |  |||| |||||||||||||    
T  10407649 aggattaaacacaaataagtccataactttgcacttccgttatcactttagttcctgacgttaaaaaaatctgttaagtgatgatgt 10407563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 90 - 160
Target Start/End: Original strand, 33314863 - 33314933
Alignment:
Q  90 aaatggtcactttggttcctgactttgcacctcgcagtcttaaaggttcctgattcaggattaaatacaaa 160  Q
    ||||| || ||||||| ||| |||||||||||||| |||| ||||||  |||| ||| |||||||||||||    
T  33314863 aaatgatcgctttggtcccttactttgcacctcgctgtctcaaaggtctctgactcaagattaaatacaaa 33314933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 131 - 197
Target Start/End: Original strand, 45476205 - 45476271
Alignment:
Q  131 aaaggttcctgattcaggattaaatacaaagtagtccctgaatgtgcacttccgttatcactttagt 197  Q
    |||||| | |||||||| ||||||||||||  |||| |||| | |||||||| ||||||||||||||    
T  45476205 aaaggtccatgattcagaattaaatacaaataagtctctgactctgcacttctgttatcactttagt 45476271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 139 - 232
Target Start/End: Original strand, 5736893 - 5736986
Alignment:
Q  139 ctgattcaggattaaatacaaagtagtccctgaatgtgcacttccgttatcactttagttcataatgttaaatagttctggtaagtgatgatgt 232  Q
    ||||||||| ||||||||||||| | || || | | | ||||| ||||||||||||||| | | | |||||||| || || |||||||||||||    
T  5736893 ctgattcagaattaaatacaaagaaatctctaactctacactttcgttatcactttagtccctcacgttaaataattttgttaagtgatgatgt 5736986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 148 - 197
Target Start/End: Original strand, 8569468 - 8569517
Alignment:
Q  148 gattaaatacaaagtagtccctgaatgtgcacttccgttatcactttagt 197  Q
    ||||||||||||||||||   ||||||||||||| |||||||| ||||||    
T  8569468 gattaaatacaaagtagtttatgaatgtgcactttcgttatcagtttagt 8569517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 55; Significance: 1e-22; HSPs: 20)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 90 - 232
Target Start/End: Complemental strand, 9538170 - 9538028
Alignment:
Q  90 aaatggtcactttggttcctgactttgcacctcgcagtcttaaaggttcctgattcaggattaaatacaaagtagtccctgaatgtgcacttccgttatc 189  Q
    |||| ||||||||||| ||||||| |||| ||||  ||| || |||| ||||| |||||||||||||||||| |||| |||| |||||||||||||||||    
T  9538170 aaatagtcactttggtccctgactctgcatctcgttgtcatataggtccctgactcaggattaaatacaaagaagtctctgattgtgcacttccgttatc 9538071  T
Q  190 actttagttcataatgttaaatagttctggtaagtgatgatgt 232  Q
    | ||||||   | |||||||||| || || |||||||| ||||    
T  9538070 attttagtctctgatgttaaataattatgttaagtgattatgt 9538028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 148 - 231
Target Start/End: Complemental strand, 35538364 - 35538281
Alignment:
Q  148 gattaaatacaaagtagtccctgaatgtgcacttccgttatcactttagttcataatgttaaatagttctggtaagtgatgatg 231  Q
    |||||||||||||||||| | | ||||||||||||||||||||||||| | | |||||||||||| ||||| ||| ||||||||    
T  35538364 gattaaatacaaagtagttcttcaatgtgcacttccgttatcactttaatccttaatgttaaataattctgttaactgatgatg 35538281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 83 - 199
Target Start/End: Original strand, 8074446 - 8074562
Alignment:
Q  83 ttcgagtaaatggtcactttggttcctgactttgcacctcgcagtcttaaaggttcctgattcaggattaaatacaaagtagtccctgaatgtgcacttc 182  Q
    |||||| |||| |||||||| || ||||| | |||| ||||| |||  | | || ||||| |||||||||||||||||  ||||||||| | ||||||||    
T  8074446 ttcgagcaaatagtcactttagtccctgattatgcagctcgctgtcacataagtccctgactcaggattaaatacaaataagtccctgactctgcacttc 8074545  T
Q  183 cgttatcactttagttc 199  Q
    |||||||||||||||||    
T  8074546 cgttatcactttagttc 8074562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 87 - 179
Target Start/End: Original strand, 23772809 - 23772901
Alignment:
Q  87 agtaaatggtcactttggttcctgactttgcacctcgcagtcttaaaggttcctgattcaggattaaatacaaagtagtccctgaatgtgcac 179  Q
    ||||||||||||||||| |  |||||||||||||||||  || |||| || |||||  || |||||||||||||||||| |||||||||||||    
T  23772809 agtaaatggtcactttgatctctgactttgcacctcgctatcataaaagtccctgacacaagattaaatacaaagtagttcctgaatgtgcac 23772901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 90 - 197
Target Start/End: Complemental strand, 28591235 - 28591128
Alignment:
Q  90 aaatggtcactttggttcctgactttgcacctcgcagtcttaaaggttcctgattcaggattaaatacaaagtagtccctgaatgtgcacttccgttatc 189  Q
    |||| ||||||||| | ||||||| |||||||||| |||  | |||| ||||| |||||||||||||||||  | ||||||| | ||||||||| |||||    
T  28591235 aaatagtcactttgatccctgactctgcacctcgctgtcacataggtccctgactcaggattaaatacaaataaatccctgactctgcacttcctttatc 28591136  T
Q  190 actttagt 197  Q
    ||||||||    
T  28591135 actttagt 28591128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 90 - 197
Target Start/End: Original strand, 16611730 - 16611837
Alignment:
Q  90 aaatggtcactttggttcctgactttgcacctcgcagtcttaaaggttcctgattcaggattaaatacaaagtagtccctgaatgtgcacttccgttatc 189  Q
    |||||||||||||  ||| ||||| | |||||||| |||  | ||||  |||| |||||||||||||||||| || | |||| | |||||||||||||||    
T  16611730 aaatggtcactttaattcttgactctacacctcgctgtcacataggtctctgactcaggattaaatacaaagaagcctctgattatgcacttccgttatc 16611829  T
Q  190 actttagt 197  Q
    ||||||||    
T  16611830 actttagt 16611837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 138 - 232
Target Start/End: Original strand, 4592911 - 4593005
Alignment:
Q  138 cctgattcaggattaaatacaaagtagtccctgaatgtgcacttccgttatcactttagttcataatgttaaatagttctggtaagtgatgatgt 232  Q
    ||||| ||| |||||||||||||  ||||||||| | ||||||||||||||||||||||| | | | |||||| |  |||| |||||||||||||    
T  4592911 cctgactcaagattaaatacaaataagtccctgactctgcacttccgttatcactttagtccctgacgttaaaaaaatctgttaagtgatgatgt 4593005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 109 - 197
Target Start/End: Original strand, 19182971 - 19183059
Alignment:
Q  109 tgactttgcacctcgcagtcttaaaggttcctgattcaggattaaatacaaagtagtccctgaatgtgcacttccgttatcactttagt 197  Q
    |||||||||||||||| |||  | ||||  |||| |||||||||||||||||  ||| ||||| | | |||||||||||||||||||||    
T  19182971 tgactttgcacctcgctgtcacataggtctctgactcaggattaaatacaaataagttcctgactctacacttccgttatcactttagt 19183059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 90 - 197
Target Start/End: Complemental strand, 2466895 - 2466788
Alignment:
Q  90 aaatggtcactttggttcctgactttgcacctcgcagtcttaaaggttcctgattcaggattaaatacaaagtagtccctgaatgtgcacttccgttatc 189  Q
    |||| |||||||||||  |||||| ||||||||||  ||  | ||||   ||||||||||||||||| |||  ||||||| | | |||||||||||||||    
T  2466895 aaatagtcactttggtctctgactctgcacctcgctatcacataggtcattgattcaggattaaataaaaataagtccctaactctgcacttccgttatc 2466796  T
Q  190 actttagt 197  Q
    ||||||||    
T  2466795 actttagt 2466788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 90 - 197
Target Start/End: Complemental strand, 12445537 - 12445431
Alignment:
Q  90 aaatggtcactttggttcctgactttgcacctcgcagtcttaaaggttcctgattcaggattaaatacaaagtagtccctgaatgtgcacttccgttatc 189  Q
    |||| ||||||||| | | ||||| ||||||||||  |   ||||||  ||||||| | |||||||| |||||||||| |||||||||||||||||||||    
T  12445537 aaatagtcactttgatccttgactctgcacctcgctcttacaaaggtctctgattcggaattaaatataaagtagtcc-tgaatgtgcacttccgttatc 12445439  T
Q  190 actttagt 197  Q
    || |||||    
T  12445438 accttagt 12445431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 90 - 232
Target Start/End: Original strand, 9537025 - 9537166
Alignment:
Q  90 aaatggtcactttggttcctgactttgcacctcgcagtcttaaaggttcctgattcaggattaaatacaaagtagtccctgaatgtgcacttccgttatc 189  Q
    ||||||| ||||| || ||| ||| |||||||||| |||  | ||||  |||| | || ||||||||||||| ||||  ||| ||||||||||| |||||    
T  9537025 aaatggtgactttagtccctcactctgcacctcgctgtcacataggtctctgacttagaattaaatacaaagaagtca-tgactgtgcacttccattatc 9537123  T
Q  190 actttagttcataatgttaaatagttctggtaagtgatgatgt 232  Q
    ||||||||   | | |||||||| || ||||||||||||||||    
T  9537124 actttagtcactgacgttaaataattatggtaagtgatgatgt 9537166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 148 - 210
Target Start/End: Original strand, 19271402 - 19271464
Alignment:
Q  148 gattaaatacaaagtagtccctgaatgtgcacttccgttatcactttagttcataatgttaaa 210  Q
    ||||||||| |||||||||| | |||||||||||||||||||| |||||| ||| | ||||||    
T  19271402 gattaaatataaagtagtcctttaatgtgcacttccgttatcagtttagtccatgacgttaaa 19271464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 146 - 227
Target Start/End: Original strand, 18004696 - 18004777
Alignment:
Q  146 aggattaaatacaaagtagtccctgaatgtgcacttccgttatcactttagttcataatgttaaatagttctggtaagtgat 227  Q
    ||||||||||||||||  |||  ||| | |||||||||||||||||||||||   | ||||||||||||| || ||||||||    
T  18004696 aggattaaatacaaagaggtctatgactctgcacttccgttatcactttagtctctgatgttaaatagttatgttaagtgat 18004777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 90 - 195
Target Start/End: Original strand, 25590433 - 25590537
Alignment:
Q  90 aaatggtcactttggttcctgactttgcacctcgcagtcttaaaggttcctgattcaggattaaatacaaagtagtccctgaatgtgcacttccgttatc 189  Q
    |||| ||||||||| || |||||| |||||||||| |||  | |||| ||||| || ||||||||||||||  |||| |||| | |||||||| ||||||    
T  25590433 aaatagtcactttgttttctgactctgcacctcgctgtcacataggtccctgactc-ggattaaatacaaataagtctctgattctgcacttctgttatc 25590531  T
Q  190 acttta 195  Q
    ||||||    
T  25590532 acttta 25590537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 133 - 197
Target Start/End: Complemental strand, 546114 - 546050
Alignment:
Q  133 aggttcctgattcaggattaaatacaaagtagtccctgaatgtgcacttccgttatcactttagt 197  Q
    |||| ||||| ||||||||||||||| |  ||||| ||| | |||||||||||||||||||||||    
T  546114 aggtccctgactcaggattaaatacagataagtccttgactctgcacttccgttatcactttagt 546050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 86 - 182
Target Start/End: Original strand, 18400188 - 18400284
Alignment:
Q  86 gagtaaatggtcactttggttcctgactttgcacctcgcagtcttaaaggttcctgattcaggattaaatacaaagtagtccctgaatgtgcacttc 182  Q
    ||||||||||||||||| || ||||||| |||||||| | |||  | |||| | ||| ||||||||||||| |||| |||| |||| | ||||||||    
T  18400188 gagtaaatggtcactttagtccctgactctgcacctcactgtcacataggtccttgactcaggattaaataaaaagaagtcactgactctgcacttc 18400284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 163 - 206
Target Start/End: Original strand, 14881022 - 14881065
Alignment:
Q  163 agtccctgaatgtgcacttccgttatcactttagttcataatgt 206  Q
    ||||||||| | ||||||||||||||||||||||||| ||||||    
T  14881022 agtccctgactctgcacttccgttatcactttagttcctaatgt 14881065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 139 - 218
Target Start/End: Complemental strand, 30970657 - 30970578
Alignment:
Q  139 ctgattcaggattaaatacaaagtagtccctgaatgtgcacttccgttatcactttagttcataatgttaaatagttctg 218  Q
    |||| ||| |||||||||||||||| ||  |||||||||| ||| |||||||||||||| | |||  ||||||| |||||    
T  30970657 ctgactcaagattaaatacaaagtaatcattgaatgtgcatttctgttatcactttagtccctaacattaaataattctg 30970578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 86 - 195
Target Start/End: Original strand, 577836 - 577943
Alignment:
Q  86 gagtaaatggtcactttggttcctgactttgcacctcgcagtcttaaaggttcctgattcaggattaaatacaaagtagtccctgaatgtgcacttccgt 185  Q
    |||||||||  ||||||||| ||||| | ||||| |||  ||| ||||||||| ||| | ||||||||||||||||||||| || | |||||| || |||    
T  577836 gagtaaatgaccactttggt-cctgattctgcacttcgttgtcataaaggttc-tgacttaggattaaatacaaagtagtctctcagtgtgcattttcgt 577933  T
Q  186 tatcacttta 195  Q
    ||||| ||||    
T  577934 tatcagttta 577943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 108 - 197
Target Start/End: Complemental strand, 26327175 - 26327086
Alignment:
Q  108 ctgactttgcacctcgcagtcttaaaggttcctgattcaggattaaatacaaagtagtccctgaatgtgcacttccgttatcactttagt 197  Q
    |||||| |||||||||  ||| ||| || |||||| ||||||||||||| ||| ||  || || |||||||||||||| |||| ||||||    
T  26327175 ctgactctgcacctcgttgtcataagggctcctgactcaggattaaatataaaataacccttggatgtgcacttccgtaatcagtttagt 26327086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 51; Significance: 2e-20; HSPs: 22)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 138 - 232
Target Start/End: Original strand, 21621873 - 21621967
Alignment:
Q  138 cctgattcaggattaaatacaaagtagtccctgaatgtgcacttccgttatcactttagttcataatgttaaatagttctggtaagtgatgatgt 232  Q
    ||||| ||||||||||||||||| |||||  ||||||||||||||||||||||||||||| | | |||||||||| || || ||| |||||||||    
T  21621873 cctgactcaggattaaatacaaaatagtcattgaatgtgcacttccgttatcactttagtccctgatgttaaataattatgttaactgatgatgt 21621967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 138 - 197
Target Start/End: Complemental strand, 21623190 - 21623131
Alignment:
Q  138 cctgattcaggattaaatacaaagtagtccctgaatgtgcacttccgttatcactttagt 197  Q
    ||||||||||||||||||||||| |||||| |||||||||||||| ||||||||||||||    
T  21623190 cctgattcaggattaaatacaaaatagtccttgaatgtgcacttctgttatcactttagt 21623131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 90 - 197
Target Start/End: Complemental strand, 53771170 - 53771063
Alignment:
Q  90 aaatggtcactttggttcctgactttgcacctcgcagtcttaaaggttcctgattcaggattaaatacaaagtagtccctgaatgtgcacttccgttatc 189  Q
    ||||||||||||| || ||||||| |||||||||  |||  | |||| ||||| |||| ||||||||||||| || |||||| | |||||||||||||||    
T  53771170 aaatggtcactttagtccctgactctgcacctcgttgtcacataggtccctgactcagaattaaatacaaagaagcccctgactctgcacttccgttatc 53771071  T
Q  190 actttagt 197  Q
    ||||||||    
T  53771070 actttagt 53771063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 139 - 197
Target Start/End: Complemental strand, 32244760 - 32244702
Alignment:
Q  139 ctgattcaggattaaatacaaagtagtccctgaatgtgcacttccgttatcactttagt 197  Q
    |||||||||||||||| |||||||||||| ||||||||||| |||||||||||||||||    
T  32244760 ctgattcaggattaaagacaaagtagtccttgaatgtgcacatccgttatcactttagt 32244702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 131 - 198
Target Start/End: Original strand, 2786264 - 2786331
Alignment:
Q  131 aaaggttcctgattcaggattaaatacaaagtagtccctgaatgtgcacttccgttatcactttagtt 198  Q
    |||||||| ||| ||||||||||||||||| || ||| |||||||||||||||||||||| |||||||    
T  2786264 aaaggttcatgactcaggattaaatacaaattactccttgaatgtgcacttccgttatcattttagtt 2786331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 146 - 229
Target Start/End: Original strand, 32244332 - 32244415
Alignment:
Q  146 aggattaaatacaaagtagtccctgaatgtgcacttccgttatcactttagttcataatgttaaatagttctggtaagtgatga 229  Q
    ||||||||| |||||||||||  | |||||||||||||||||||||||| || ||||| |||||||| || || ||||||||||    
T  32244332 aggattaaagacaaagtagtcattaaatgtgcacttccgttatcactttggtccataacgttaaataattatgttaagtgatga 32244415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 86 - 197
Target Start/End: Original strand, 53770331 - 53770442
Alignment:
Q  86 gagtaaatggtcactttggttcctgactttgcacctcgcagtcttaaaggttcctgattcaggattaaatacaaagtagtccctgaatgtgcacttccgt 185  Q
    ||||||||||||||||| ||  |||||| ||||||||||| ||  | |||||||||| |||| ||||||||||||| ||||  ||| | ||||||||| |    
T  53770331 gagtaaatggtcactttagtctctgactctgcacctcgcattcacataggttcctgactcagaattaaatacaaagaagtctatgactctgcacttccat 53770430  T
Q  186 tatcactttagt 197  Q
    ||||||| ||||    
T  53770431 tatcactctagt 53770442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 148 - 230
Target Start/End: Original strand, 4701825 - 4701907
Alignment:
Q  148 gattaaatacaaagtagtccctgaatgtgcacttccgttatcactttagttcataatgttaaatagttctggtaagtgatgat 230  Q
    |||||||||||||| |||||| || | |||||||||| |||||||||||| | | |||||||||| ||||| |||||||||||    
T  4701825 gattaaatacaaagaagtccccgactatgcacttccgctatcactttagtccctgatgttaaataattctgttaagtgatgat 4701907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 86 - 195
Target Start/End: Complemental strand, 24746197 - 24746091
Alignment:
Q  86 gagtaaatggtcactttggttcctgactttgcacctcgcagtcttaaaggttcctgattcaggattaaatacaaagtagtccctgaatgtgcacttccgt 185  Q
    ||||||||| ||| |||||| ||||||| | || ||||  |||  |||||||||||||  |||||||||||||||||| ||| | |||||||||||||||    
T  24746197 gagtaaatgatca-tttggtccctgactctacatctcgatgtcacaaaggttcctgat--aggattaaatacaaagtactccttaaatgtgcacttccgt 24746101  T
Q  186 tatcacttta 195  Q
    ||||||||||    
T  24746100 tatcacttta 24746091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 130 - 197
Target Start/End: Complemental strand, 25810494 - 25810427
Alignment:
Q  130 taaaggttcctgattcaggattaaatacaaagtagtccctgaatgtgcacttccgttatcactttagt 197  Q
    ||||||| ||| ||||| ||||||||||||||||| |  |||||||||||||||| ||||||||||||    
T  25810494 taaaggtccctcattcaagattaaatacaaagtagcctatgaatgtgcacttccgctatcactttagt 25810427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 90 - 197
Target Start/End: Complemental strand, 47878605 - 47878498
Alignment:
Q  90 aaatggtcactttggttcctgactttgcacctcgcagtcttaaaggttcctgattcaggattaaatacaaagtagtccctgaatgtgcacttccgttatc 189  Q
    |||| ||||||||| | ||||||| |||||||||| ||   | |||| ||||| || ||||||||||||||  ||||||||| | | |||||||||||||    
T  47878605 aaatagtcactttgatccctgactctgcacctcgctgttacataggtccctgactctggattaaatacaaataagtccctgactctacacttccgttatc 47878506  T
Q  190 actttagt 197  Q
    ||||||||    
T  47878505 actttagt 47878498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 133 - 197
Target Start/End: Original strand, 47874609 - 47874673
Alignment:
Q  133 aggttcctgattcaggattaaatacaaagtagtccctgaatgtgcacttccgttatcactttagt 197  Q
    |||| ||||| ||| |||||||||||||  ||||||||| | |||||||||||||||||||||||    
T  47874609 aggtccctgactcaagattaaatacaaataagtccctgattctgcacttccgttatcactttagt 47874673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 90 - 197
Target Start/End: Complemental strand, 4703338 - 4703231
Alignment:
Q  90 aaatggtcactttggttcctgactttgcacctcgcagtcttaaaggttcctgattcaggattaaatacaaagtagtccctgaatgtgcacttccgttatc 189  Q
    |||| |||||||| ||| |||||| | || ||||| |||  | |||| ||| | |||| ||||||||||||| ||||  ||| ||| |||||||||||||    
T  4703338 aaattgtcactttagttactgactctacatctcgctgtcacataggtccctaactcagaattaaatacaaagaagtctttgactgtacacttccgttatc 4703239  T
Q  190 actttagt 197  Q
    ||||||||    
T  4703238 actttagt 4703231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 133 - 232
Target Start/End: Original strand, 42278094 - 42278193
Alignment:
Q  133 aggttcctgattcaggattaaatacaaagtagtccctgaatgtgcacttccgttatcactttagttcataatgttaaatagttctggtaagtgatgatgt 232  Q
    |||| ||||| || ||||||||||||||  ||| ||||| | ||||||||||||||||||||| | | | | |||||| |  |||| |||||||||||||    
T  42278094 aggtccctgactcgggattaaatacaaataagttcctgactctgcacttccgttatcactttaatccctgacgttaaaaaaatctgttaagtgatgatgt 42278193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 131 - 197
Target Start/End: Complemental strand, 26173022 - 26172956
Alignment:
Q  131 aaaggttcctgattcaggattaaatacaaagtagtccctgaatgtgcacttccgttatcactttagt 197  Q
    |||||| | ||| ||| |||||||||||||  |||| |||| | |||||||||||||||||||||||    
T  26173022 aaaggtccttgactcaagattaaatacaaataagtctctgactctgcacttccgttatcactttagt 26172956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 133 - 171
Target Start/End: Original strand, 44158549 - 44158587
Alignment:
Q  133 aggttcctgattcaggattaaatacaaagtagtccctga 171  Q
    |||||||||| |||||||||||||||||| |||||||||    
T  44158549 aggttcctgactcaggattaaatacaaagaagtccctga 44158587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 148 - 197
Target Start/End: Original strand, 19050298 - 19050347
Alignment:
Q  148 gattaaatacaaagtagtccctgaatgtgcacttccgttatcactttagt 197  Q
    |||||||||||||| |||| | || | |||||||||||||||||||||||    
T  19050298 gattaaatacaaagaagtctcggactctgcacttccgttatcactttagt 19050347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 149 - 197
Target Start/End: Complemental strand, 24753623 - 24753575
Alignment:
Q  149 attaaatacaaagtagtccctgaatgtgcacttccgttatcactttagt 197  Q
    |||||||| ||||||   |||||||||||||||| ||||||||||||||    
T  24753623 attaaatataaagtaactcctgaatgtgcacttctgttatcactttagt 24753575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 148 - 232
Target Start/End: Original strand, 26170700 - 26170784
Alignment:
Q  148 gattaaatacaaagtagtccctgaatgtgcacttccgttatcactttagttcataatgttaaatagttctggtaagtgatgatgt 232  Q
    |||||||||||||  ||| ||| | | ||||||||| ||||||||||||| |||  ||||||| | || || |||||||||||||    
T  26170700 gattaaatacaaataagttccttactctgcacttccattatcactttagtccatgctgttaaaaaattttgttaagtgatgatgt 26170784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 90 - 194
Target Start/End: Original strand, 31844724 - 31844828
Alignment:
Q  90 aaatggtcactttggttcctgactttgcacctcgcagtcttaaaggttcctgattcaggattaaatacaaagtagtccctgaatgtgcacttccgttatc 189  Q
    |||| |||||||| || |||  || |||||||||| |||  | |||| ||||| |||||||||||||||||  ||||||| | | | ||||||| |||||    
T  31844724 aaatagtcactttagtccctagctctgcacctcgctgtcacataggtccctgactcaggattaaatacaaacaagtccctaactctacacttcccttatc 31844823  T
Q  190 acttt 194  Q
    |||||    
T  31844824 acttt 31844828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 149 - 225
Target Start/End: Complemental strand, 48740082 - 48740006
Alignment:
Q  149 attaaatacaaagtagtccctgaatgtgcacttccgttatcactttagttcataatgttaaatagttctggtaagtg 225  Q
    ||||||||||||| ||||||  | | |||||||| |||||||||||||| | | | |||||||| ||||| ||||||    
T  48740082 attaaatacaaagaagtccccaactctgcacttctgttatcactttagtccctgacgttaaataattctgttaagtg 48740006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 90 - 210
Target Start/End: Original strand, 54574427 - 54574547
Alignment:
Q  90 aaatggtcactttggttcctgactttgcacctcgcagtcttaaaggttcctgattcaggattaaatacaaagtagtccctgaatgtgcacttccgttatc 189  Q
    |||| |||| |||| ||||| ||| |||| ||||| |||  | ||||  |||| |||||||||||||||||  ||| | | | | |||||||||||||||    
T  54574427 aaatagtcattttgcttcctcactctgcatctcgctgtcacataggtctctgactcaggattaaatacaaataagttcttaactctgcacttccgttatc 54574526  T
Q  190 actttagttcataatgttaaa 210  Q
    |||||| ||| | ||||||||    
T  54574527 actttaattcctgatgttaaa 54574547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 48; Significance: 1e-18; HSPs: 24)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 90 - 225
Target Start/End: Complemental strand, 45601059 - 45600925
Alignment:
Q  90 aaatggtcactttggttcctgactttgcacctcgcagtcttaaaggttcctgattcaggattaaatacaaagtagtccctgaatgtgcacttccgttatc 189  Q
    |||| |||||||| || ||||||| ||  |||||| |||  | |||| |||||||||||||||||||||||| ||| ||||| | |||||||||||||||    
T  45601059 aaatcgtcactttagtccctgactctgtccctcgctgtcacataggtccctgattcaggattaaatacaaagaagt-cctgactctgcacttccgttatc 45600961  T
Q  190 actttagttcataatgttaaatagttctggtaagtg 225  Q
    |||||||| ||  | |||||||| ||||| ||||||    
T  45600960 actttagtccacgacgttaaataattctgttaagtg 45600925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 90 - 232
Target Start/End: Original strand, 20464071 - 20464213
Alignment:
Q  90 aaatggtcactttggttcctgactttgcacctcgcagtcttaaaggttcctgattcaggattaaatacaaagtagtccctgaatgtgcacttccgttatc 189  Q
    |||||| |||||| || || |||| |||||||||  |||  |||||| ||||  ||| |||||||||||||| ||||||||| | |||||||| ||||||    
T  20464071 aaatggacactttagtccccgactctgcacctcgttgtcacaaaggtccctggctcatgattaaatacaaagaagtccctgactctgcacttctgttatc 20464170  T
Q  190 actttagttcataatgttaaatagttctggtaagtgatgatgt 232  Q
    |||||||| ||  | ||||||||  |||| |||||||||||||    
T  20464171 actttagtccacgacgttaaataactctgttaagtgatgatgt 20464213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 133 - 197
Target Start/End: Original strand, 17700563 - 17700627
Alignment:
Q  133 aggttcctgattcaggattaaatacaaagtagtccctgaatgtgcacttccgttatcactttagt 197  Q
    |||||||||| |||||||||||||||||  ||||||||| | |||||||||||||||||||||||    
T  17700563 aggttcctgactcaggattaaatacaaataagtccctgactctgcacttccgttatcactttagt 17700627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 86 - 197
Target Start/End: Original strand, 40205879 - 40205991
Alignment:
Q  86 gagtaaatggtcactttggttcctgactttgcacctcgcagtcttaaaggt-tcctgattcaggattaaatacaaagtagtccctgaatgtgcacttccg 184  Q
    ||||||||||||| ||| || || |||| || | ||||| ||| ||||||| || ||| ||| ||||||| ||||||||||| |||||||||||||||||    
T  40205879 gagtaaatggtcattttagtcccggactctgtagctcgctgtcataaaggtctcttgactcacgattaaaaacaaagtagtctctgaatgtgcacttccg 40205978  T
Q  185 ttatcactttagt 197  Q
    |||||| ||||||    
T  40205979 ttatcagtttagt 40205991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 86 - 197
Target Start/End: Complemental strand, 17702044 - 17701933
Alignment:
Q  86 gagtaaatggtcactttggttcctgactttgcacctcgcagtcttaaaggttcctgattcaggattaaatacaaagtagtccctgaatgtgcacttccgt 185  Q
    |||||||| |||||||| ||  |||| | |||| ||||| ||| || |||| ||||| ||| |||||||||||||  ||||||||| | |||||||||||    
T  17702044 gagtaaatagtcactttagtctctgattctgcagctcgctgtcatataggtccctgactcaagattaaatacaaataagtccctgactctgcacttccgt 17701945  T
Q  186 tatcactttagt 197  Q
    ||||||||||||    
T  17701944 tatcactttagt 17701933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 144 - 232
Target Start/End: Complemental strand, 36827542 - 36827454
Alignment:
Q  144 tcaggattaaatacaaagtagtccctgaatgtgcacttccgttatcactttagttcataatgttaaatagttctggtaagtgatgatgt 232  Q
    ||||||||||||| ||| || || |||||||| |||||||||||||||||||||   | |||||||||| || || |||||||||||||    
T  36827542 tcaggattaaatataaaataatctctgaatgtacacttccgttatcactttagtctctgatgttaaataattttgttaagtgatgatgt 36827454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 90 - 197
Target Start/End: Complemental strand, 33428556 - 33428449
Alignment:
Q  90 aaatggtcactttggttcctgactttgcacctcgcagtcttaaaggttcctgattcaggattaaatacaaagtagtccctgaatgtgcacttccgttatc 189  Q
    ||||||||||||| || ||||||| |||||||||  |||  | |||| ||||| |||| ||||||||||||| ||||| ||| | |||| ||||||| ||    
T  33428556 aaatggtcactttcgtccctgactctgcacctcgttgtcacataggtccctgactcagaattaaatacaaagaagtccttgactctgcatttccgttgtc 33428457  T
Q  190 actttagt 197  Q
    ||||||||    
T  33428456 actttagt 33428449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 133 - 232
Target Start/End: Original strand, 36278997 - 36279096
Alignment:
Q  133 aggttcctgattcaggattaaatacaaagtagtccctgaatgtgcacttccgttatcactttagttcataatgttaaatagttctggtaagtgatgatgt 232  Q
    |||| |||||||||||||||||||||||  |||| |||| | |||||||||||||||| |||||| | | | |||||| | ||||  |||||||||||||    
T  36278997 aggtccctgattcaggattaaatacaaataagtctctgactctgcacttccgttatcattttagtccctgacgttaaaaaattcttttaagtgatgatgt 36279096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 90 - 197
Target Start/End: Complemental strand, 47118172 - 47118065
Alignment:
Q  90 aaatggtcactttggttcctgactttgcacctcgcagtcttaaaggttcctgattcaggattaaatacaaagtagtccctgaatgtgcacttccgttatc 189  Q
    ||||||||||||| || ||||||| |||||||||  ||| || | || || || |||||||||||| ||||| |||| |||| | ||||||| |||||||    
T  47118172 aaatggtcactttagtccctgactctgcacctcgttgtcatataagtccccgactcaggattaaatgcaaagaagtctctgactctgcactttcgttatc 47118073  T
Q  190 actttagt 197  Q
    ||||||||    
T  47118072 actttagt 47118065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 90 - 197
Target Start/End: Original strand, 48572987 - 48573094
Alignment:
Q  90 aaatggtcactttggttcctgactttgcacctcgcagtcttaaaggttcctgattcaggattaaatacaaagtagtccctgaatgtgcacttccgttatc 189  Q
    |||| ||||||||||| ||||||| |||||||||   ||  | |||| ||||| |||||||||||||||||  || | |||| | |||||||||||||||    
T  48572987 aaatagtcactttggtccctgactctgcacctcgttatcacataggtccctgactcaggattaaatacaaataagcctctgactctgcacttccgttatc 48573086  T
Q  190 actttagt 197  Q
    ||||||||    
T  48573087 actttagt 48573094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 90 - 195
Target Start/End: Original strand, 34263807 - 34263912
Alignment:
Q  90 aaatggtcactttggttcctgactttgcacctcgcagtcttaaaggttcctgattcaggattaaatacaaagtagtccctgaatgtgcacttccgttatc 189  Q
    |||| ||||||||||  ||||||| |||||||||| |||  | |||| | |||||||||||||||||||||  |||| |||| | | ||||||| |||||    
T  34263807 aaatagtcactttggcccctgactctgcacctcgctgtcacagaggtccttgattcaggattaaatacaaataagtctctgactctacacttccattatc 34263906  T
Q  190 acttta 195  Q
    ||||||    
T  34263907 acttta 34263912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 133 - 197
Target Start/End: Complemental strand, 48574537 - 48574473
Alignment:
Q  133 aggttcctgattcaggattaaatacaaagtagtccctgaatgtgcacttccgttatcactttagt 197  Q
    |||| ||||| |||||||||||||||||  ||||||||| | ||||||| |||||||||||||||    
T  48574537 aggtccctgactcaggattaaatacaaataagtccctgactctgcactttcgttatcactttagt 48574473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 149 - 232
Target Start/End: Original strand, 612275 - 612358
Alignment:
Q  149 attaaatacaaagtagtccctgaatgtgcacttccgttatcactttagttcataatgttaaatagttctggtaagtgatgatgt 232  Q
    ||||||||||||| ||||| |||||||| ||||  |||||||||||||||| | |  ||||||| || || |||||||||||||    
T  612275 attaaatacaaagaagtccgtgaatgtgtacttatgttatcactttagttcctcacattaaataattatgttaagtgatgatgt 612358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 83 - 230
Target Start/End: Original strand, 2591622 - 2591769
Alignment:
Q  83 ttcgagtaaatggtcactttggttcctgactttgcacctcgcagtcttaaaggttcctgattcaggattaaatacaaagtagtccctgaatgtgcacttc 182  Q
    |||||| |||| |||||||| || ||||| | |||| || || |||  | |||| ||||| |||||||||||||||||  |||| |||| | ||||||||    
T  2591622 ttcgagcaaatagtcactttagtccctgattctgcagcttgctgtcacataggtccctgactcaggattaaatacaaacaagtctctgactctgcacttc 2591721  T
Q  183 cgttatcactttagttcataatgttaaatagttctggtaagtgatgat 230  Q
    | | ||||||||||| | | ||||||| |  ||||| |||||||||||    
T  2591722 catgatcactttagtccctgatgttaagttattctgttaagtgatgat 2591769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 90 - 197
Target Start/End: Original strand, 19114535 - 19114642
Alignment:
Q  90 aaatggtcactttggttcctgactttgcacctcgcagtcttaaaggttcctgattcaggattaaatacaaagtagtccctgaatgtgcacttccgttatc 189  Q
    ||||| ||||||| || ||||||| ||||| |||  |||  | |||| ||||| ||| |||||||||||||| |||| || | | |||||||||||||||    
T  19114535 aaatgatcactttagtccctgactctgcacttcgttgtcacagaggtccctgactcaagattaaatacaaagaagtcactaactttgcacttccgttatc 19114634  T
Q  190 actttagt 197  Q
    ||||||||    
T  19114635 actttagt 19114642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 90 - 231
Target Start/End: Complemental strand, 52318438 - 52318297
Alignment:
Q  90 aaatggtcactttggttcctgactttgcacctcgcagtcttaaaggttcctgattcaggattaaatacaaagtagtccctgaatgtgcacttccgttatc 189  Q
    |||| |||||||||||  |||||| ||||| |||| |||  | || | ||||| |||||||||||||||||  ||||||||| | |||||||| | |||     
T  52318438 aaatagtcactttggtctctgactctgcacttcgctgtcacatagatccctgactcaggattaaatacaaataagtccctgactctgcacttctgatatt 52318339  T
Q  190 actttagttcataatgttaaatagttctggtaagtgatgatg 231  Q
    |||||||| | | | |||||| |  |||| ||||||||||||    
T  52318338 actttagtccctgacgttaaaaaaatctgttaagtgatgatg 52318297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 133 - 197
Target Start/End: Complemental strand, 11773129 - 11773065
Alignment:
Q  133 aggttcctgattcaggattaaatacaaagtagtccctgaatgtgcacttccgttatcactttagt 197  Q
    |||| ||||| |||||||||||||||||  |||| |||| | | |||||||||||||||||||||    
T  11773129 aggtccctgactcaggattaaatacaaataagtctctgactctacacttccgttatcactttagt 11773065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 85 - 225
Target Start/End: Complemental strand, 19115272 - 19115133
Alignment:
Q  85 cgagtaaatggtcactttggttcctgactttgcacctcgcagtcttaaaggttcctgattcaggattaaatacaaagtagtccctgaatgtgcacttccg 184  Q
    |||| |||| |||||||| |||| ||||| |||||||||  |||  | |||| | | | |||||||||||||||||| ||||  ||| | ||||||||||    
T  19115272 cgagcaaatagtcactttagttcgtgactctgcacctcgatgtcacataggtccttcactcaggattaaatacaaagaagtca-tgactctgcacttccg 19115174  T
Q  185 ttatcactttagttcataatgttaaatagttctggtaagtg 225  Q
    || | |||||||| | ||| |||||||| ||||| ||||||    
T  19115173 tttttactttagtccctaacgttaaataattctgttaagtg 19115133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 146 - 201
Target Start/End: Complemental strand, 29188455 - 29188400
Alignment:
Q  146 aggattaaatacaaagtagtccctgaatgtgcacttccgttatcactttagttcat 201  Q
    |||||||| ||||||||||||  ||||| ||||||| | |||||||||||||||||    
T  29188455 aggattaattacaaagtagtcattgaatatgcactttcattatcactttagttcat 29188400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 90 - 197
Target Start/End: Original strand, 55388075 - 55388182
Alignment:
Q  90 aaatggtcactttggttcctgactttgcacctcgcagtcttaaaggttcctgattcaggattaaatacaaagtagtccctgaatgtgcacttccgttatc 189  Q
    |||| |||||||| || ||||| | |||| ||||| ||| || ||||  |||| |||||||||||||||||  |||  |||| | |||||| ||||||||    
T  55388075 aaatagtcactttagtccctgattctgcagctcgctgtcatataggtctctgactcaggattaaatacaaataagttactgactctgcactcccgttatc 55388174  T
Q  190 actttagt 197  Q
    ||||||||    
T  55388175 actttagt 55388182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 139 - 197
Target Start/End: Complemental strand, 36280389 - 36280331
Alignment:
Q  139 ctgattcaggattaaatacaaagtagtccctgaatgtgcacttccgttatcactttagt 197  Q
    |||| ||||||||||||| |||  |||| |||| | |||||||||||||||||||||||    
T  36280389 ctgactcaggattaaatataaataagtctctgactctgcacttccgttatcactttagt 36280331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 140 - 197
Target Start/End: Original strand, 33427804 - 33427860
Alignment:
Q  140 tgattcaggattaaatacaaagtagtccctgaatgtgcacttccgttatcactttagt 197  Q
    ||||||||||||||||||||| ||  |||||| | ||||||| |||||||||||||||    
T  33427804 tgattcaggattaaatacaaatta-accctgactctgcactttcgttatcactttagt 33427860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 133 - 197
Target Start/End: Complemental strand, 2592085 - 2592021
Alignment:
Q  133 aggttcctgattcaggattaaatacaaagtagtccctgaatgtgcacttccgttatcactttagt 197  Q
    |||| ||||| |||||||||||||||||  ||||||||| |    ||||||||||||||||||||    
T  2592085 aggtccctgactcaggattaaatacaaataagtccctgactcaatacttccgttatcactttagt 2592021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 131 - 195
Target Start/End: Original strand, 39497250 - 39497314
Alignment:
Q  131 aaaggttcctgattcaggattaaatacaaagtagtccctgaatgtgcacttccgttatcacttta 195  Q
    |||||| | ||| ||||||||||||||||| ||||   ||||||||||||| |||||||| ||||    
T  39497250 aaaggtccatgactcaggattaaatacaaaatagttattgaatgtgcactttcgttatcagttta 39497314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0034 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 90 - 197
Target Start/End: Original strand, 116057 - 116164
Alignment:
Q  90 aaatggtcactttggttcctgactttgcacctcgcagtcttaaaggttcctgattcaggattaaatacaaagtagtccctgaatgtgcacttccgttatc 189  Q
    |||| |||||||| |||||| | | |||| ||||| |||  | |||| ||||| |||||||||||||||||  ||||||||| | |||||||||||||||    
T  116057 aaatagtcactttagttcctcattctgcagctcgctgtcacataggtccctgactcaggattaaatacaaataagtccctgactatgcacttccgttatc 116156  T
Q  190 actttagt 197  Q
    ||||||||    
T  116157 actttagt 116164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 86 - 187
Target Start/End: Complemental strand, 3778919 - 3778818
Alignment:
Q  86 gagtaaatggtcactttggttcctgactttgcacctcgcagtcttaaaggttcctgattcaggattaaatacaaagtagtccctgaatgtgcacttccgt 185  Q
    |||||||||||||||||| | ||||||||||||| ||||  ||  ||| |   |||| ||||| ||||||||||||||||||||| ||||||||||| ||    
T  3778919 gagtaaatggtcactttgatccctgactttgcacttcgctatcacaaatgccactgaatcaggcttaaatacaaagtagtccctggatgtgcacttctgt 3778820  T
Q  186 ta 187  Q
    ||    
T  3778819 ta 3778818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 90 - 217
Target Start/End: Original strand, 31218957 - 31219084
Alignment:
Q  90 aaatggtcactttggttcctgactttgcacctcgcagtcttaaaggttcctgattcaggattaaatacaaagtagtccctgaatgtgcacttccgttatc 189  Q
    |||||||||||||  |  |||||| |||||||||| |||  | |||| | | | |||||||||||||||||| ||| ||||| | |||||||||||||||    
T  31218957 aaatggtcactttaatctctgactctgcacctcgctgtcacataggtccttaactcaggattaaatacaaagaagttcctgactctgcacttccgttatc 31219056  T
Q  190 actttagttcataatgttaaatagttct 217  Q
    |||||| | | | |||||||||| ||||    
T  31219057 actttaatccctgatgttaaataattct 31219084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 86 - 181
Target Start/End: Complemental strand, 6468906 - 6468811
Alignment:
Q  86 gagtaaatggtcactttggttcctgactttgcacctcgcagtcttaaaggttcctgattcaggattaaatacaaagtagtccctgaatgtgcactt 181  Q
    |||||||||||||||||| |   ||||| ||||  |||| |||  |||||| ||||| ||| ||||||||||||| ||||| ||||||||||||||    
T  6468906 gagtaaatggtcactttgttctttgactctgcatatcgctgtcacaaaggtccctgactcatgattaaatacaaaatagtctctgaatgtgcactt 6468811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 86 - 197
Target Start/End: Complemental strand, 12676595 - 12676484
Alignment:
Q  86 gagtaaatggtcactttggttcctgactttgcacctcgcagtcttaaaggttcctgattcaggattaaatacaaagtagtccctgaatgtgcacttccgt 185  Q
    |||||||| ||||||||| |  |||||| |||||||||  |||  || |||  |||  ||||||||||||||||||||||| || |||||||||||  ||    
T  12676595 gagtaaatagtcactttgatatctgactctgcacctcgttgtcacaatggtctctgtctcaggattaaatacaaagtagtctctaaatgtgcacttttgt 12676496  T
Q  186 tatcactttagt 197  Q
    ||||| ||||||    
T  12676495 tatcagtttagt 12676484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 144 - 195
Target Start/End: Complemental strand, 29350276 - 29350225
Alignment:
Q  144 tcaggattaaatacaaagtagtccctgaatgtgcacttccgttatcacttta 195  Q
    ||||||||||| |||||||||| ||| |||||||| |||| |||||||||||    
T  29350276 tcaggattaaagacaaagtagttccttaatgtgcatttccattatcacttta 29350225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 90 - 197
Target Start/End: Original strand, 30748001 - 30748108
Alignment:
Q  90 aaatggtcactttggttcctgactttgcacctcgcagtcttaaaggttcctgattcaggattaaatacaaagtagtccctgaatgtgcacttccgttatc 189  Q
    |||| |||||||| || ||||| | |||||||||| |||  | |||| ||||| | |||||||||||||||  |||| |||| | | ||||| |||||||    
T  30748001 aaatagtcactttagtccctgattctgcacctcgctgtcacataggtccctgacttaggattaaatacaaacaagtctctgactctacactttcgttatc 30748100  T
Q  190 actttagt 197  Q
    ||||||||    
T  30748101 actttagt 30748108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 90 - 197
Target Start/End: Complemental strand, 31219281 - 31219174
Alignment:
Q  90 aaatggtcactttggttcctgactttgcacctcgcagtcttaaaggttcctgattcaggattaaatacaaagtagtccctgaatgtgcacttccgttatc 189  Q
    |||||||||||||  | ||||||| |||||||||| |||  | ||||   | | |||||||||||||||||| ||| ||||| |   |||||||||||||    
T  31219281 aaatggtcactttaatccctgactctgcacctcgctgtcacataggtcattaactcaggattaaatacaaagaagttcctgactcgacacttccgttatc 31219182  T
Q  190 actttagt 197  Q
    ||||||||    
T  31219181 actttagt 31219174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 139 - 197
Target Start/End: Original strand, 5265250 - 5265308
Alignment:
Q  139 ctgattcaggattaaatacaaagtagtccctgaatgtgcacttccgttatcactttagt 197  Q
    |||||||| |||||||| |||| ||| |  |||||||||||||||||||||| ||||||    
T  5265250 ctgattcaagattaaatgcaaattagcctttgaatgtgcacttccgttatcagtttagt 5265308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0767 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0767
Description:

Target: scaffold0767; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 139 - 197
Target Start/End: Original strand, 5650 - 5708
Alignment:
Q  139 ctgattcaggattaaatacaaagtagtccctgaatgtgcacttccgttatcactttagt 197  Q
    |||| |||| ||||||||||||| ||||||||| | | |||||||||||||||||||||    
T  5650 ctgactcagaattaaatacaaagaagtccctgactctacacttccgttatcactttagt 5708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0039 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 90 - 232
Target Start/End: Original strand, 79075 - 79217
Alignment:
Q  90 aaatggtcactttggttcctgactttgcacctcgcagtcttaaaggttcctgattcaggattaaatacaaagtagtccctgaatgtgcacttccgttatc 189  Q
    |||| |||| ||| |||||||||| |||||||||| |||  | |||| | ||| ||| ||||||||| |||| ||||| ||| | ||||| |||| ||||    
T  79075 aaatagtcaatttagttcctgactctgcacctcgctgtcacataggtccttgactcatgattaaataaaaagaagtccttgactttgcacctccgatatc 79174  T
Q  190 actttagttcataatgttaaatagttctggtaagtgatgatgt 232  Q
    ||||||||   | | |||||||| || || |||||||||||||    
T  79175 actttagtctttgacgttaaataattttgttaagtgatgatgt 79217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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