View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16967_high_8 (Length: 507)
Name: NF16967_high_8
Description: NF16967
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16967_high_8 |
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Alignment Details
Target: chr1 (Bit Score: 439; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 439; E-Value: 0
Query Start/End: Original strand, 15 - 489
Target Start/End: Original strand, 29505628 - 29506102
Alignment:
| Q |
15 |
aactttatagatgttatagatgaaaaatatggaagcatctttcgaaggttctttgagtcttcttaattatggtgagtagctaaattttcatatcagcaag |
114 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||| ||||| |
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| T |
29505628 |
aactttatagatgttatagatgaaaaatatcgaagcatctttcaaaggttctttgagtcttcttaattatggtgagtagctaagttttcatatctgcaag |
29505727 |
T |
|
| Q |
115 |
attcattttcaaaattagaaatgtagtttggaccagatatattgttcttcaaatatttcaatcttaaaattgccagaaaatgaataccgtgtcattaaca |
214 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
29505728 |
attcattttcaaaattagaaatgtagtttggaccagatatattgttcttcaaatatttcaatcttaaaattaccagaaaatgaataccgtgtcattaaca |
29505827 |
T |
|
| Q |
215 |
agaaaaacagtttatcttaccatctcaatgcatgtttgcctttacatcacaacacaagcacacgaaatttgccgcataaaaatataaagaaaagaacatc |
314 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29505828 |
agaaaaacagtttatcttaccatctcaatgcatgtttgcctttgcatcacaacacaagcacacgaaatttgccgcataaaaatataaagaaaagaacatc |
29505927 |
T |
|
| Q |
315 |
gtgtacgagataaacatcacaaagcatgaattattctacattatggttcatgactggatcaatgatcataaggaaatgctaccaactcttcaaatatgag |
414 |
Q |
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|| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29505928 |
gtttatgagataaacatcacaaagcatgaattattctacattatggttcatgactggatcaatgatcataaggaaatgctaccaactcttcaaatatgag |
29506027 |
T |
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| Q |
415 |
tatcttactatacatgtgaatcatatctttctttcttgattgatacaaaggtgaattcaatcaacacgaatctct |
489 |
Q |
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| T |
29506028 |
tatcttactatacatgtgaatcatatctttctttcttgattgatacaaaagtgaattcaatcaacacgaatctct |
29506102 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 99 - 179
Target Start/End: Complemental strand, 10241116 - 10241036
Alignment:
| Q |
99 |
ttttcatatcagcaagattcattttcaaaattagaaatgtagtttggaccagatatattgttcttcaaatatttcaatctt |
179 |
Q |
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|||||||||| ||||| || | ||| ||||||||||| || |||||||| |||||||||||||||||||| ||| |||| |
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| T |
10241116 |
ttttcatatctgcaaggtttagcttccaaattagaaatttaacttggaccatatatattgttcttcaaatatctcactctt |
10241036 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 413 - 443
Target Start/End: Original strand, 36251230 - 36251260
Alignment:
| Q |
413 |
agtatcttactatacatgtgaatcatatctt |
443 |
Q |
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| T |
36251230 |
agtatcttactatacatgtgaatcatatctt |
36251260 |
T |
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