View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16967_low_1 (Length: 858)
Name: NF16967_low_1
Description: NF16967
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16967_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 692; Significance: 0; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 692; E-Value: 0
Query Start/End: Original strand, 14 - 843
Target Start/End: Complemental strand, 37783359 - 37782522
Alignment:
| Q |
14 |
aatatataggcagagatagcaacaagtaagagctgaagaggattgaaagcagatgtaaatataggacctctcatctttatgcaccaagaaataacaacaa |
113 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37783359 |
aatatataggcagagatagcaacaagtaagagctgaagaggattgaaagcagatgtaaatataggacctctcatctttatgcaccaagaaataacaacaa |
37783260 |
T |
|
| Q |
114 |
tcactaatccagaggctacaattccctgcagtaacattcacttgcatttaacaactacattcgaacctttaatttaacacatatat-----atatgaagg |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||| |
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| T |
37783259 |
tcactaatccagaggctacaattccctgcaataacattcacttgcatttaacaactacattcgaacctttaatataacacatatatgatatatatgaagg |
37783160 |
T |
|
| Q |
209 |
gagtaaaattcttgtaaattccactaaatttacttgtgtcccagtctaaagtagannnnnnnn-gtctctatgttgtaaataattagaaaatgcattgtc |
307 |
Q |
| |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||| |||||||||| |||||||| |
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| T |
37783159 |
gagtaaaattcttgtaaattccactaaatttacgtgtgtcccagtctaaagtagatttttttttgtctctatgttgtaaaaaattagaaaaagcattgtc |
37783060 |
T |
|
| Q |
308 |
caatatatatttctcaaatttttgttcatatttgaatctacctatctcaaataaaaaacttgaagtggtttgattgattgagtttctacgagcataccga |
407 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
37783059 |
caatatatatttctcaaatttttgttcatatttgaatctacctatctcaaataaaaaacttgaattggtttgattgattgagtttctacgagcataccga |
37782960 |
T |
|
| Q |
408 |
ataagcaatagtaagaagtctgatatcgtaaccgagcttccattgattccaatctctatcgatacaaagagcaaaaacaatggcttgaatcgctgccatt |
507 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37782959 |
ataagcaatagtaagaagtctgatatcgtaaccgagcttccattgattccaatctctatcgatacaaagagcaaaaacaatggcttgaatcgctgccatt |
37782860 |
T |
|
| Q |
508 |
gtgcacaccaatgctgagcatgaattgtgttctggaaattcttcattcaatttagcctgagtcatgtaaagttaatggaccataacatgcaaaacaactc |
607 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||| ||||||||||||||||||||||||||||| |
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|
| T |
37782859 |
gtgcacaccaatgctgagcatgaattgtgttctggaaattcttcattcaacttagcctgagtcatataaacttaatggaccataacatgcaaaacaactc |
37782760 |
T |
|
| Q |
608 |
atatatcatatattcatataaacacaatgatatgtaaaaggcaaagttgcattagagatccctcaactaatttaggatataaaaagtttctttatctttt |
707 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
37782759 |
atatatcatatattcatataaacacaatgatatgtaaaaggcaatgttgcattagagatccctcaactaatttaggatataaaaagtttctttatctctt |
37782660 |
T |
|
| Q |
708 |
taattaattaaaatcatcatttatctttctaaacgacaacaatattggtcatgcagtgattatctatcaaaaatcgtg--ggnnnnnnnnngcattcttc |
805 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
37782659 |
taattaattaaaatcatcatttatctttctaaacgacaacaatattggtcatgcagtgattatctatcaaaaatcgtgaaaaaaaaaaaaagcattcttc |
37782560 |
T |
|
| Q |
806 |
atggtttcggaagatgttcaccaaatgtacaactttgt |
843 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||| |
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| T |
37782559 |
atggtttcggaagatgttcaccaaatgtacaaccttgt |
37782522 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 85; E-Value: 5e-40
Query Start/End: Original strand, 394 - 566
Target Start/End: Complemental strand, 37808350 - 37808178
Alignment:
| Q |
394 |
tacgagcataccgaataagcaatagtaagaagtctgatatcgtaaccgagcttccattgattccaatctctatcgatacaaagagcaaaaacaatggctt |
493 |
Q |
| |
|
|||||||||||||||||||| ||||| ||||| |||||||||||||| |||||||||| ||||||| ||||||| ||||||||||| ||||||||||| |
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| T |
37808350 |
tacgagcataccgaataagccatagtgagaagcctgatatcgtaacccagcttccattcggtccaatccctatcgacacaaagagcaacaacaatggctt |
37808251 |
T |
|
| Q |
494 |
gaatcgctgccattgtgcacaccaatgctgagcatgaattgtgttctggaaattcttcattcaatttagcctg |
566 |
Q |
| |
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||| ||| |||||| ||||| ||||||||||||||||| || |||| ||||||||||||| |||||||| |
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| T |
37808250 |
gaactgctcccattgagcacatcaatgctgagcatgaatgatggaatggatattcttcattcaacttagcctg |
37808178 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 19 - 169
Target Start/End: Complemental strand, 37808598 - 37808448
Alignment:
| Q |
19 |
ataggcagagatagcaacaagtaagagctgaagaggattgaaagcagatgtaaatataggacctctcatctttatgcaccaagaaataacaacaatcact |
118 |
Q |
| |
|
||||||| ||| ||| |||||||| |||||||||||||||||| |||| ||||| |||||| |||||| |||| |||||||||||||||| || |||| |
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| T |
37808598 |
ataggcaaagacagctacaagtaaaagctgaagaggattgaaaacagacacaaatagaggacccctcatccttatacaccaagaaataacaataaccact |
37808499 |
T |
|
| Q |
119 |
aatccagaggctacaattccctgcagtaacattcacttgcatttaacaact |
169 |
Q |
| |
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| |||||| | ||||| ||||||| |||||||||| | |||||||||||| |
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|
| T |
37808498 |
gacccagagaccacaataccctgcattaacattcacatacatttaacaact |
37808448 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 397 - 509
Target Start/End: Complemental strand, 37792320 - 37792208
Alignment:
| Q |
397 |
gagcataccgaataagcaatagtaagaagtctgatatcgtaaccgagcttccattgattccaatctctatcgatacaaagagcaaaaacaatggcttgaa |
496 |
Q |
| |
|
||||||||||||||||| | | ||||||||||||| |||||| ||||||||||| || ||||||| || | ||||| ||||||||| |||||||||| |
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| T |
37792320 |
gagcataccgaataagctaccatgagaagtctgatattgtaaccaagcttccattgggtcaaatctctgtccacacaaatagcaaaaacgatggcttgaa |
37792221 |
T |
|
| Q |
497 |
tcgctgccattgt |
509 |
Q |
| |
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| ||| ||||||| |
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| T |
37792220 |
ttgctcccattgt |
37792208 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 397 - 509
Target Start/End: Complemental strand, 37802012 - 37801900
Alignment:
| Q |
397 |
gagcataccgaataagcaatagtaagaagtctgatatcgtaaccgagcttccattgattccaatctctatcgatacaaagagcaaaaacaatggcttgaa |
496 |
Q |
| |
|
||||||||||||||||| | | ||||||||||||| |||||| ||||||||||| || ||||||| || | ||||| ||||||||| |||||||||| |
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|
| T |
37802012 |
gagcataccgaataagctaccatgagaagtctgatattgtaaccaagcttccattgggtcaaatctctgtccacacaaatagcaaaaacgatggcttgaa |
37801913 |
T |
|
| Q |
497 |
tcgctgccattgt |
509 |
Q |
| |
|
| ||| ||||||| |
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|
| T |
37801912 |
ttgctcccattgt |
37801900 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 23 - 110
Target Start/End: Complemental strand, 37803885 - 37803798
Alignment:
| Q |
23 |
gcagagatagcaacaagtaagagctgaagaggattgaaagcagatgtaaatataggacctctcatctttatgcaccaagaaataacaa |
110 |
Q |
| |
|
||||||| ||| |||||||| || |||||||||| |||| |||| | ||| | ||| |||||||||||||||||||||| |||||||| |
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|
| T |
37803885 |
gcagagacagccacaagtaaaagttgaagaggatagaaaacagaggcaaagagagggcctctcatctttatgcaccaagcaataacaa |
37803798 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 35 - 140
Target Start/End: Complemental strand, 37792503 - 37792398
Alignment:
| Q |
35 |
acaagtaagagctgaagaggattgaaagcagatgtaaatataggacctctcatctttatgcaccaagaaataacaacaatcactaatccagaggctacaa |
134 |
Q |
| |
|
||||||| ||| |||||||||| |||| |||| | ||| | ||| |||||||||||||||||||| | |||||||| | | || |||||||||||||| |
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|
| T |
37792503 |
acaagtaggagttgaagaggatagaaaacagaggcaaaaagagggcctctcatctttatgcaccaggcaataacaatagtagttattccagaggctacaa |
37792404 |
T |
|
| Q |
135 |
ttccct |
140 |
Q |
| |
|
|||||| |
|
|
| T |
37792403 |
ttccct |
37792398 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 50 - 134
Target Start/End: Original strand, 1213982 - 1214066
Alignment:
| Q |
50 |
agaggattgaaagcagatgtaaatataggacctctcatctttatgcaccaagaaataacaacaatcactaatccagaggctacaa |
134 |
Q |
| |
|
||||| ||||| |||||| ||||| ||| || ||||||||||||||||| ||| | |||| || ||||||||||||||| |||| |
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|
| T |
1213982 |
agagggttgaagacagatgcaaataaaggtcccctcatctttatgcaccacgaagtcacaataaccactaatccagaggcaacaa |
1214066 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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