View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16967_low_10 (Length: 494)

Name: NF16967_low_10
Description: NF16967
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16967_low_10
NF16967_low_10
[»] chr5 (1 HSPs)
chr5 (5-478)||(11634998-11635472)
[»] chr3 (13 HSPs)
chr3 (5-48)||(30239068-30239111)
chr3 (5-63)||(29649068-29649126)
chr3 (5-65)||(30201207-30201267)
chr3 (1-56)||(29856876-29856931)
chr3 (109-203)||(29856996-29857090)
chr3 (5-55)||(30227382-30227432)
chr3 (2-55)||(29751882-29751935)
chr3 (14-62)||(30223140-30223188)
chr3 (13-61)||(36333932-36333980)
chr3 (5-39)||(30214753-30214787)
chr3 (26-63)||(29713035-29713072)
chr3 (14-63)||(30230381-30230430)
chr3 (13-61)||(36313855-36313903)
[»] chr8 (1 HSPs)
chr8 (2-56)||(1152919-1152973)
[»] chr6 (2 HSPs)
chr6 (5-54)||(5569421-5569470)
chr6 (5-38)||(5574415-5574448)
[»] chr7 (2 HSPs)
chr7 (9-61)||(16644731-16644783)
chr7 (9-61)||(17619092-17619144)
[»] chr1 (1 HSPs)
chr1 (12-48)||(16955668-16955704)


Alignment Details
Target: chr5 (Bit Score: 447; Significance: 0; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 447; E-Value: 0
Query Start/End: Original strand, 5 - 478
Target Start/End: Original strand, 11634998 - 11635472
Alignment:
Q  5 tgtcctctatggtggaacatatgcaaggatcctctcatgtggcgtaccattcgcatgataggtgattgcagttactttaatgcaaatttgccagagatct 104  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||| ||||||||||    
T  11634998 tgtcctctatggtggagcatatgcaaggatcctctcatgtggcgtaccattcgcatgataggtgaacgcagttactttaatgcaaatttcccagagatct 11635097  T
Q  105 gtcattatgctgttgaacgaagctgcggtcatttagaagagatttctgttgagtattttgccacagatgagctccttgaattcatagttgagaagtaata 204  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11635098 gtcattatgctgttgaacgaagctgcggtcatttagaagagatttctgttgagtattttgccacagatgagctccttgaattcatagttgagaagtaata 11635197  T
Q  205 ataattgataaaagaatcttttttcttgtatatatttcaattgcttatattgttttatcatccatgatttattttctaaatttttatgctgcttaatgat 304  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11635198 ataattgataaaagaatcttttttcttgtatatatttcaattgcgtatattgttttatcatccatgatttattttctaaatttttatgctgcttaatgat 11635297  T
Q  305 ggctttatgcatttgcagtggcactaatctgagatgcatgcggcttgtagaatgccaatacatttcagatgaaggattttgcaaagctgtgagaaaac-t 403  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  11635298 ggctttatgcatttgcagtggcactaatctgagatgcatgcggcttgtagaatgccaatacatttcagatgaaggattttgcaaagctgtgagaaaactt 11635397  T
Q  404 ttgcagttagaggagttagagatttcattatgtagcctatcgaaggagtctcttgaagtccttggccgatcttgc 478  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11635398 ttgcagttagaggagttagagatttcattatgtagcctatcgaaggagtctcttgaagtccttggccgatcttgc 11635472  T

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Target: chr3 (Bit Score: 44; Significance: 8e-16; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 5 - 48
Target Start/End: Original strand, 30239068 - 30239111
Alignment:
Q  5 tgtcctctatggtggaacatatgcaaggatcctctcatgtggcg 48  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  30239068 tgtcctctatggtggaacatatgcaaggatcctctcatgtggcg 30239111  T

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Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 5 - 63
Target Start/End: Original strand, 29649068 - 29649126
Alignment:
Q  5 tgtcctctatggtggaacatatgcaaggatcctctcatgtggcgtaccattcgcatgat 63  Q
    |||||||||| ||||||||| || |||||||||||||||||||||||||||| ||||||    
T  29649068 tgtcctctatcgtggaacatttgtaaggatcctctcatgtggcgtaccattcacatgat 29649126  T

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Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 5 - 65
Target Start/End: Original strand, 30201207 - 30201267
Alignment:
Q  5 tgtcctctatggtggaacatatgcaaggatcctctcatgtggcgtaccattcgcatgatag 65  Q
    |||||||||||||||||||| ||||||||||||||||||||||  |||||||  |||||||    
T  30201207 tgtcctctatggtggaacatttgcaaggatcctctcatgtggcacaccattcatatgatag 30201267  T

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Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 29856876 - 29856931
Alignment:
Q  1 agtttgtcctctatggtggaacatatgcaaggatcctctcatgtggcgtaccattc 56  Q
    ||||||||||||||||||| ||||||| || ||||||||| |||||||||||||||    
T  29856876 agtttgtcctctatggtgggacatatgtaaagatcctctcctgtggcgtaccattc 29856931  T

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Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 109 - 203
Target Start/End: Original strand, 29856996 - 29857090
Alignment:
Q  109 ttatgctgttgaacgaagctgcggtcatttagaagagatttctgttgagtattttgccacagatgagctccttgaattcatagttgagaagtaat 203  Q
    |||||||||||||||||| ||||||||| | ||||| ||   | ||||||||| ||  || ||||| |||||||||||||||| |||||||||||    
T  29856996 ttatgctgttgaacgaagttgcggtcatcttgaagacatcaatattgagtattctgtaactgatgaactccttgaattcatagctgagaagtaat 29857090  T

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Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 5 - 55
Target Start/End: Original strand, 30227382 - 30227432
Alignment:
Q  5 tgtcctctatggtggaacatatgcaaggatcctctcatgtggcgtaccatt 55  Q
    |||||||||| ||||||||| ||||||||||||||||||||||| ||||||    
T  30227382 tgtcctctatagtggaacatttgcaaggatcctctcatgtggcgcaccatt 30227432  T

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Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 2 - 55
Target Start/End: Original strand, 29751882 - 29751935
Alignment:
Q  2 gtttgtcctctatggtggaacatatgcaaggatcctctcatgtggcgtaccatt 55  Q
    ||||||||||| ||||||||| | ||||||||||||||||||||| ||||||||    
T  29751882 gtttgtcctctttggtggaacgtttgcaaggatcctctcatgtggagtaccatt 29751935  T

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Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 14 - 62
Target Start/End: Original strand, 30223140 - 30223188
Alignment:
Q  14 tggtggaacatatgcaaggatcctctcatgtggcgtaccattcgcatga 62  Q
    ||||||||||| ||||||||||||||||||||||| ||||||| |||||    
T  30223140 tggtggaacatttgcaaggatcctctcatgtggcgcaccattcacatga 30223188  T

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Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 13 - 61
Target Start/End: Complemental strand, 36333980 - 36333932
Alignment:
Q  13 atggtggaacatatgcaaggatcctctcatgtggcgtaccattcgcatg 61  Q
    |||||||||||| ||||||||||||||||||||||| || |||||||||    
T  36333980 atggtggaacatttgcaaggatcctctcatgtggcgcactattcgcatg 36333932  T

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Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 5 - 39
Target Start/End: Original strand, 30214753 - 30214787
Alignment:
Q  5 tgtcctctatggtggaacatatgcaaggatcctct 39  Q
    |||||||||||||||||||| ||||||||||||||    
T  30214753 tgtcctctatggtggaacatttgcaaggatcctct 30214787  T

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Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 26 - 63
Target Start/End: Original strand, 29713035 - 29713072
Alignment:
Q  26 tgcaaggatcctctcatgtggcgtaccattcgcatgat 63  Q
    |||||||||||||| |||||||||||||||| ||||||    
T  29713035 tgcaaggatcctctaatgtggcgtaccattcacatgat 29713072  T

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Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 14 - 63
Target Start/End: Original strand, 30230381 - 30230430
Alignment:
Q  14 tggtggaacatatgcaaggatcctctcatgtggcgtaccattcgcatgat 63  Q
    ||||||| ||| ||||||||||||| ||||||||| ||||||| ||||||    
T  30230381 tggtggagcatttgcaaggatcctcgcatgtggcgcaccattcacatgat 30230430  T

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Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 13 - 61
Target Start/End: Complemental strand, 36313903 - 36313855
Alignment:
Q  13 atggtggaacatatgcaaggatcctctcatgtggcgtaccattcgcatg 61  Q
    ||||| ||| || ||||||||||||||||||||||| || |||||||||    
T  36313903 atggttgaagatttgcaaggatcctctcatgtggcgcactattcgcatg 36313855  T

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Target: chr8 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 2 - 56
Target Start/End: Complemental strand, 1152973 - 1152919
Alignment:
Q  2 gtttgtcctctatggtggaacatatgcaaggatcctctcatgtggcgtaccattc 56  Q
    ||||||||||| |||||| |||| |||||||||||||| ||||||||||||||||    
T  1152973 gtttgtcctctgtggtggcacatttgcaaggatcctctaatgtggcgtaccattc 1152919  T

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Target: chr6 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 5 - 54
Target Start/End: Complemental strand, 5569470 - 5569421
Alignment:
Q  5 tgtcctctatggtggaacatatgcaaggatcctctcatgtggcgtaccat 54  Q
    |||||||||||||||||||| ||||||||||||||  |||||||||||||    
T  5569470 tgtcctctatggtggaacatttgcaaggatcctcttgtgtggcgtaccat 5569421  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 5 - 38
Target Start/End: Complemental strand, 5574448 - 5574415
Alignment:
Q  5 tgtcctctatggtggaacatatgcaaggatcctc 38  Q
    |||||||||||||||||||| |||||||||||||    
T  5574448 tgtcctctatggtggaacatttgcaaggatcctc 5574415  T

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Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 9 - 61
Target Start/End: Complemental strand, 16644783 - 16644731
Alignment:
Q  9 ctctatggtggaacatatgcaaggatcctctcatgtggcgtaccattcgcatg 61  Q
    |||||||||||||||| |||||||| |||||||||||||| ||||||| ||||    
T  16644783 ctctatggtggaacatttgcaaggaacctctcatgtggcgcaccattcacatg 16644731  T

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Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 9 - 61
Target Start/End: Complemental strand, 17619144 - 17619092
Alignment:
Q  9 ctctatggtggaacatatgcaaggatcctctcatgtggcgtaccattcgcatg 61  Q
    |||||||||||||||| |||||||| |||||||||||||| ||||||| ||||    
T  17619144 ctctatggtggaacatttgcaaggaacctctcatgtggcgcaccattcacatg 17619092  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 12 - 48
Target Start/End: Complemental strand, 16955704 - 16955668
Alignment:
Q  12 tatggtggaacatatgcaaggatcctctcatgtggcg 48  Q
    |||||||||| || |||||||||||||||||||||||    
T  16955704 tatggtggaatatttgcaaggatcctctcatgtggcg 16955668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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