View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16967_low_11 (Length: 474)
Name: NF16967_low_11
Description: NF16967
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16967_low_11 |
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Alignment Details
Target: chr2 (Bit Score: 247; Significance: 1e-137; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 1 - 288
Target Start/End: Original strand, 4225559 - 4225848
Alignment:
| Q |
1 |
tatttcttggcctacgttaaattaaatatgtgttaagctagnnnnnnnn--cctttttaaaataaataatgttaacttctccttaaagaagtcaaagtaa |
98 |
Q |
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| T |
4225559 |
tatttcttggcctacgttaaattaaatatgtgttaagctagaaaaaaaaaacctttttaaaataaataatgttaacttctccttaaagaagtcaaagtaa |
4225658 |
T |
|
| Q |
99 |
cttattcaattcagacaaagttttaggacttaattttgagccaccaccatacctttaatttaattcaatcactaatttgctccattgatgattcctttca |
198 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
4225659 |
cttattcaattcagacaaagttttaggacttaattttgagccaccaccatacctttaatctaattcaatcactaatttgctccattgatgattcctttca |
4225758 |
T |
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| Q |
199 |
accgaaaaaacgattattctaatatttttaaagagactaaacacatgtcaactaaatagcctggaaataaattgtactgtctttgtgata |
288 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
4225759 |
accgaaaaaacgattattctaatatttttaaagagactaaacacatgtcaactaaatagcctggaaataaattgtactctctttgtgata |
4225848 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 328 - 451
Target Start/End: Original strand, 4225844 - 4225967
Alignment:
| Q |
328 |
tgataatatacgaggttgaacgaggtggtcgtttagcttgctagcatgtcttgcacattgctttgatgcaattcctcttctgatgaagtgattaaggatt |
427 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
4225844 |
tgataatatacgaggttgaacgaggtggtcgtttagcttgctagcatgtcttgcacattgctttgatgcaaatcctcttctgatgaagtgattaaggatt |
4225943 |
T |
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| Q |
428 |
cttttgatgtagttctatcgaagt |
451 |
Q |
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| T |
4225944 |
cttttgatgtagttctatcgaagt |
4225967 |
T |
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