View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16967_low_12 (Length: 441)
Name: NF16967_low_12
Description: NF16967
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16967_low_12 |
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Alignment Details
Target: chr5 (Bit Score: 407; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 407; E-Value: 0
Query Start/End: Original strand, 1 - 423
Target Start/End: Complemental strand, 2390793 - 2390371
Alignment:
| Q |
1 |
tggtgttaatagcttagaatttagaaacagaggaaaaaatagagatacagtttcttgtttttccttgaattgttactctcaaagtagatttttgagatga |
100 |
Q |
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| T |
2390793 |
tggtgttcataacttagaatttagaaacagaggaaaaaatagagatacagtttcttttttttccttgaattgttactctcaaagtagatttttgagatga |
2390694 |
T |
|
| Q |
101 |
atcattctggagctgaaagtgatcataaaataacatcagttgaagttatcaaggacaaaaatggaatagaacaagttgttcttcgaaacgttcgaggagc |
200 |
Q |
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| T |
2390693 |
atcattctggagctgaaagtgatcataaaataacatcagttgaagttatcaaggacaaaaatggaatagaacaagttgttcttcgaaacgttcgaggagc |
2390594 |
T |
|
| Q |
201 |
ttcagcaacggttacattttctcaactctttcgatttcaatttcaactacctcatccactcttttgaatttgattgatgctagcgttgtgtgtgtgacct |
300 |
Q |
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| T |
2390593 |
ttcagcaacggttacattttctcaactctttcgatttcaatttcaactacctcatccactcttttgaatttgattgatgctagcgttgtgtgtgtgactt |
2390494 |
T |
|
| Q |
301 |
tttcaggttagcttgcatggagggcaagttctttcatggaaaacagaacgcggtgaagagttattgttcactagtaccaaggtaaatgaggtttttcgtg |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2390493 |
tttcaggttagcttgcatggagggcaagttctttcatggaaaacagaacgcggtgaagagttattgttcactagtaccaaggtaaatgaggtttttcgtg |
2390394 |
T |
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| Q |
401 |
tcagatatttcctatgtagcact |
423 |
Q |
| |
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||||||||||||||||||||||| |
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| T |
2390393 |
tcagatatttcctatgtagcact |
2390371 |
T |
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