View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16967_low_17 (Length: 371)
Name: NF16967_low_17
Description: NF16967
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16967_low_17 |
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Alignment Details
Target: chr5 (Bit Score: 346; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 1 - 354
Target Start/End: Original strand, 34388028 - 34388381
Alignment:
| Q |
1 |
ccacgaatcatgataatcgggttaaacggagaaatgtctccaccgttaacattgtttctacggcggcgtcgaaaagtattttgattataattgttattgc |
100 |
Q |
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| T |
34388028 |
ccacgaatcatgataatcgggttaaacggagaaatgtctccaccgttaacattgtttctacggtggcgtcgaaaagtattttgattataattattattgc |
34388127 |
T |
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| Q |
101 |
gatggcctatcatgtacatagccgccgccatagggaacctcattcgacggccaccaacagtattggcggaatgtgttgattgttcgacatcttccagaaa |
200 |
Q |
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| T |
34388128 |
gatggcctatcatgtacatagccgccgccatagggaacctcattcgacggccaccaacagtattggcggaatgtgttgattgttcgacatcttccagaaa |
34388227 |
T |
|
| Q |
201 |
gccgctgtcacaatcgggacatattggcatccctagcctccataccctaacaaatttgttgcacctataacaccaatgtgaagacatctacctatagatt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34388228 |
gccgctgtcacaatcgggacatattggcatccctagcctccataccctaacaaatttgttgcacctataacaccaatgtgaagacatctacctatagatt |
34388327 |
T |
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| Q |
301 |
tgaattgatgcttttttaatccttatatagaaataagaaaaattccatgcaacc |
354 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34388328 |
tgaattgatgcttttttaatccttatatagaaataagaaaaattccatgcaacc |
34388381 |
T |
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