View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16967_low_18 (Length: 359)
Name: NF16967_low_18
Description: NF16967
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16967_low_18 |
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Alignment Details
Target: chr5 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 80 - 349
Target Start/End: Complemental strand, 17779805 - 17779536
Alignment:
| Q |
80 |
tagaagttcaacatgctaatgtaaaattgaacacaaatcaaagttnnnnnnnggtcagaatcactagtactcacttcctactatagaagctagctagaaa |
179 |
Q |
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| T |
17779805 |
tagaagttctacatgctaatgtaaaattgaacacaaatcaaagttaaaaaaaggtcagaatcaccagtactcacttcctactatagaagctagctagaaa |
17779706 |
T |
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| Q |
180 |
aaataagtgcttctagattctacttatgtaaaaataaaaggtacaaattaagtgtaacacttggttattgaataactagagggaacatcaataggacaaa |
279 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
17779705 |
aaataagtgcttctagattctacttatgtaaaaataaaaggtacaaattaagtgtaacacttggttgttgaataactagagggaacatcaataggacaaa |
17779606 |
T |
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| Q |
280 |
atgaagtatcccaaagcaaatttgacttccatgcatcaccaatattgaaattcatcaattcttgttcatc |
349 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17779605 |
atgaagtatcccaaagcaaatttgacttccatgcatcaccaatattgaaattcatcaattcttgttcatc |
17779536 |
T |
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