View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16967_low_21 (Length: 340)
Name: NF16967_low_21
Description: NF16967
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16967_low_21 |
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| [»] scaffold0003 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 281; Significance: 1e-157; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 1 - 330
Target Start/End: Complemental strand, 15555405 - 15555076
Alignment:
| Q |
1 |
ttcaagcatcaaatcaaggcagtgtgcggcacaaggcgtccaataaaatttttgcctctttcgcatcaacatctcaccagcagccttgtagttcgctgca |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15555405 |
ttcaagcatcaaatcaaggcagtgtgcggcacaaggcgtccaatataattttttcctctttcgcatcaacatctcaccagcagccttgtagttcgctgca |
15555306 |
T |
|
| Q |
101 |
ttatcagttacaacctgaacaacattatcctcccccacttcttcaacaactgcgtctatcatctcaaatattttttcagctgttttgcatatattggatg |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||| |
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| T |
15555305 |
ttatcagttacaacctgaacaacattatcctcccccacttcttcaacaactgcgtctatcatctcaaatattttttcggatgttttgcatatattggatg |
15555206 |
T |
|
| Q |
201 |
catcaacagacttcnnnnnnncagtaccccttggactattcaccaaaaagtttaaaatggttctcctcctacgatcagtccatccgtcggtcattattgt |
300 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
15555205 |
catcaacagacttcaagaaaacagtaccccttggactattcaccaaaaagtttaaaatggttctcctcctacgatcagtccattcgtcggtcattattgt |
15555106 |
T |
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| Q |
301 |
gcagccggttttcttccattccctcctatg |
330 |
Q |
| |
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||||| ||||||||||||||||||| |||| |
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| T |
15555105 |
gcagctggttttcttccattccctcttatg |
15555076 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 80; Significance: 2e-37; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 116 - 315
Target Start/End: Original strand, 8989372 - 8989572
Alignment:
| Q |
116 |
tgaacaacattatcctcccccacttcttcaacaactgcgtctatcatctcaaata-ttttttcagctgttttgcatatattggatgcatcaacagacttc |
214 |
Q |
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||||||||||||||||| ||||||||||||||||||| || |||||||||||||| ||||||||||| ||||| ||||||||||||||| ||| ||||| |
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| T |
8989372 |
tgaacaacattatcctctcccacttcttcaacaactgtgtttatcatctcaaatatttttttcagctattttgtatatattggatgcataaacgaacttc |
8989471 |
T |
|
| Q |
215 |
nnnnnnncagtaccccttggactattcaccaaaaagtttaaaatggttctcctcctacgatcagtccatccgtcggtcattattgtgcagccggttttct |
314 |
Q |
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||||||| ||||||||||||||||| |||||||||||| | || || |||||||| |||| ||| ||||||||||||||| |||| ||| |
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| T |
8989472 |
aaaaacacagtaccacttggactattcaccaagaagtttaaaatgttcatctatatatgatcagtctatccatcgatcattattgtgcagctggttgtct |
8989571 |
T |
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| Q |
315 |
t |
315 |
Q |
| |
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| |
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| T |
8989572 |
t |
8989572 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 64 - 150
Target Start/End: Original strand, 4384843 - 4384929
Alignment:
| Q |
64 |
catcaacatctcaccagcagccttgtagttcgctgcattatcagttacaacctgaacaacattatcctcccccacttcttcaacaac |
150 |
Q |
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||||||||||||||||||||| ||| | | || | |||||| || ||||| ||||||||||| || ||||| || ||||||||||| |
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| T |
4384843 |
catcaacatctcaccagcagctttgaaataagccgtattatccgtgacaacttgaacaacattttcttccccaacctcttcaacaac |
4384929 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 231 - 303
Target Start/End: Original strand, 245924 - 245996
Alignment:
| Q |
231 |
ttggactattcaccaaaaagtttaaaatggttctcctcctacgatcagtccatccgtcggtcattattgtgca |
303 |
Q |
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||||||||| ||||||||||| || || ||||| ||||| | ||||||||| || |||||||| |||||||| |
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| T |
245924 |
ttggactatgtaccaaaaagttcaatatagttcttctcctcctatcagtccaaccatcggtcataattgtgca |
245996 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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