View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16967_low_24 (Length: 333)
Name: NF16967_low_24
Description: NF16967
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16967_low_24 |
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Alignment Details
Target: chr7 (Bit Score: 315; Significance: 1e-177; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 1 - 319
Target Start/End: Complemental strand, 37903379 - 37903061
Alignment:
| Q |
1 |
gtaatagaacctcttcttctcactaatttataatcaatttagtttcattatcattgttgtttgacttgcagccttctcaagagtgtgtaacaaagacgtt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
37903379 |
gtaatagaacctcttcttctcactaatttataatcaatttagtttcattatcattgttgtttgacttgcagcctactcaagagtgtgtaacaaagacgtt |
37903280 |
T |
|
| Q |
101 |
aaaaagattggaagagaagatgcaagggcgagtaagttttctcccaaattatcagcctactcaatccttgtactgttgcttacattattggttttgatta |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37903279 |
aaaaagattggaagagaagatgcaagggcgagtaagttttctcccaaattatcagcctactcaatccttgtactgttgcttacattattggttttgatta |
37903180 |
T |
|
| Q |
201 |
ttctatcaattcctcttttgcaggtactgaaacacatgttatatcttatgcgcactggggaaaaggatcttcaaatacgtgtagctcttgctcttgcaca |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37903179 |
ttctatcaattcctcttttgcaggtactgaaacacatgttatatcttatgcgcactggggaaaaggatcttcaaatacgtgtagctcttgctcttgcaca |
37903080 |
T |
|
| Q |
301 |
tttatgttcccctgatgat |
319 |
Q |
| |
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||||||||||||||||||| |
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| T |
37903079 |
tttatgttcccctgatgat |
37903061 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 1 - 319
Target Start/End: Complemental strand, 37909890 - 37909572
Alignment:
| Q |
1 |
gtaatagaacctcttcttctcactaatttataatcaatttagtttcattatcattgttgtttgacttgcagccttctcaagagtgtgtaacaaagacgtt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
37909890 |
gtaatagaacctcttcttctcactaatttataatcaatttagtttcattatcattgttgtttgacttgcagcctactcaagagtgtgtaacaaagacgtt |
37909791 |
T |
|
| Q |
101 |
aaaaagattggaagagaagatgcaagggcgagtaagttttctcccaaattatcagcctactcaatccttgtactgttgcttacattattggttttgatta |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37909790 |
aaaaagattggaagagaagatgcaagggcgagtaagttttctcccaaattatcagcctactcaatccttgtactgttgcttacattattggttttgatta |
37909691 |
T |
|
| Q |
201 |
ttctatcaattcctcttttgcaggtactgaaacacatgttatatcttatgcgcactggggaaaaggatcttcaaatacgtgtagctcttgctcttgcaca |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37909690 |
ttctatcaattcctcttttgcaggtactgaaacacatgttatatcttatgcgcactggggaaaaggatcttcaaatacgtgtagctcttgctcttgcaca |
37909591 |
T |
|
| Q |
301 |
tttatgttcccctgatgat |
319 |
Q |
| |
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||||||||||||||||||| |
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| T |
37909590 |
tttatgttcccctgatgat |
37909572 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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