View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16967_low_27 (Length: 318)

Name: NF16967_low_27
Description: NF16967
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16967_low_27
NF16967_low_27
[»] chr4 (5 HSPs)
chr4 (1-302)||(51198028-51198330)
chr4 (1-86)||(51144373-51144458)
chr4 (1-93)||(51155513-51155605)
chr4 (1-96)||(29938475-29938570)
chr4 (5-91)||(51211558-51211644)
[»] chr1 (3 HSPs)
chr1 (1-86)||(38527181-38527266)
chr1 (1-86)||(38568482-38568567)
chr1 (197-238)||(22394043-22394084)
[»] chr3 (2 HSPs)
chr3 (8-85)||(36284771-36284848)
chr3 (23-87)||(49738534-49738598)
[»] chr2 (2 HSPs)
chr2 (19-75)||(5821155-5821211)
chr2 (30-86)||(5764242-5764298)
[»] chr5 (1 HSPs)
chr5 (200-234)||(14314748-14314782)


Alignment Details
Target: chr4 (Bit Score: 213; Significance: 1e-117; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 302
Target Start/End: Original strand, 51198028 - 51198330
Alignment:
Q  1 tgataaggaaactaatactggagaggttgttggaagaatgtctggtgatactgttcttattcaagatgccatgggtgagaaggtattaatgaaccac-at 99  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  51198028 tgataaggaaactaatactggagaggttgttggaagaatgtctggtgatactgttcttattcaagatgccatgggtgagaaggtattaatgaaccaccat 51198127  T
Q  100 acaagtcataannnnnnnnnnnnnnnnntttgtttttctatgagtaccnnnnnnnnngaatttagcgaaaatcttgtttttgttataaaggattttatat 199  Q
    |||||||||||                 ||||||||||||||||||||         |||||||||||||||||||||||||||||||||||||||||||    
T  51198128 acaagtcataaatcatcatcatcatcattttgtttttctatgagtaccaaaaaaaaagaatttagcgaaaatcttgtttttgttataaaggattttatat 51198227  T
Q  200 tggacatctggagcgtgaccctagtggcctgatagtggatggttcaacggtcacgctcatcagtcatcacttttggtgcatgggtaatatggtggctggt 299  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51198228 tggacatctggagcatgaccctagtggcctgatagtggatggttcaacggtcacgctcatcagtcatcacttttggtgcatgggtaatatggtggctggt 51198327  T
Q  300 ctg 302  Q
    |||    
T  51198328 ctg 51198330  T

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Target: chr4; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 51144373 - 51144458
Alignment:
Q  1 tgataaggaaactaatactggagaggttgttggaagaatgtctggtgatactgttcttattcaagatgccatgggtgagaaggtat 86  Q
    |||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||| | ||||||||||||||||||||||    
T  51144373 tgataaggaaactaatacgggagaggttgttggaagaatgtcaggtgatactgttcttattaaggatgccatgggtgagaaggtat 51144458  T

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Target: chr4; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 93
Target Start/End: Original strand, 51155513 - 51155605
Alignment:
Q  1 tgataaggaaactaatactggagaggttgttggaagaatgtctggtgatactgttcttattcaagatgccatgggtgagaaggtattaatgaa 93  Q
    |||||||||||||||||||||||||||||||||||| ||||| ||||||||  |||| ||| ||||||||||||| |||||||||| ||||||    
T  51155513 tgataaggaaactaatactggagaggttgttggaaggatgtcaggtgatacatttctaattaaagatgccatgggggagaaggtatcaatgaa 51155605  T

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Target: chr4; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 96
Target Start/End: Complemental strand, 29938570 - 29938475
Alignment:
Q  1 tgataaggaaactaatactggagaggttgttggaagaatgtctggtgatactgttcttattcaagatgccatgggtgagaaggtattaatgaacca 96  Q
    |||||| |||||||| |||||||||||||||||||| ||| | ||||| |||||||||||| ||||||||||||| |||||||||| |||||||||    
T  29938570 tgataaagaaactaacactggagaggttgttggaaggatggcaggtgacactgttcttattaaagatgccatgggggagaaggtatcaatgaacca 29938475  T

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Target: chr4; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 5 - 91
Target Start/End: Original strand, 51211558 - 51211644
Alignment:
Q  5 aaggaaactaatactggagaggttgttggaagaatgtctggtgatactgttcttattcaagatgccatgggtgagaaggtattaatg 91  Q
    |||||||| |||| ||| |||||||||||||||||||| |||||||| |||||||||||||| |||||||| || ||||||| ||||    
T  51211558 aaggaaacaaatagtggtgaggttgttggaagaatgtcaggtgatacagttcttattcaagaagccatgggagacaaggtatgaatg 51211644  T

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Target: chr1 (Bit Score: 62; Significance: 9e-27; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 38527266 - 38527181
Alignment:
Q  1 tgataaggaaactaatactggagaggttgttggaagaatgtctggtgatactgttcttattcaagatgccatgggtgagaaggtat 86  Q
    |||||| ||||| || || ||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38527266 tgataaagaaacaaacacaggagaagttgtaggaagaatgtctggtgatactgttcttattcaagatgccatgggtgagaaggtat 38527181  T

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Target: chr1; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 38568567 - 38568482
Alignment:
Q  1 tgataaggaaactaatactggagaggttgttggaagaatgtctggtgatactgttcttattcaagatgccatgggtgagaaggtat 86  Q
    |||||| ||||| || || ||||| ||| | || |||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  38568567 tgataaagaaacaaacacaggagaagttatagggagaatgtcaggtgatactgttcttattcaagatgccatgggtgagaaggtat 38568482  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 197 - 238
Target Start/End: Complemental strand, 22394084 - 22394043
Alignment:
Q  197 tattggacatctggagcgtgaccctagtggcctgatagtgga 238  Q
    |||||||||||||||||||| ||| |||||||||| ||||||    
T  22394084 tattggacatctggagcgtgccccaagtggcctgaaagtgga 22394043  T

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Target: chr3 (Bit Score: 46; Significance: 3e-17; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 8 - 85
Target Start/End: Original strand, 36284771 - 36284848
Alignment:
Q  8 gaaactaatactggagaggttgttggaagaatgtctggtgatactgttcttattcaagatgccatgggtgagaaggta 85  Q
    |||||||||||||| |||||||||||||| |||||  |||| ||  |||||||||||||||| |||||||||||||||    
T  36284771 gaaactaatactggcgaggttgttggaaggatgtcaagtgacacaattcttattcaagatgcaatgggtgagaaggta 36284848  T

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Target: chr3; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 23 - 87
Target Start/End: Complemental strand, 49738598 - 49738534
Alignment:
Q  23 gaggttgttggaagaatgtctggtgatactgttcttattcaagatgccatgggtgagaaggtatt 87  Q
    ||||||||||||||||| || ||||| || ||||||||||||||||||||||| |||||||||||    
T  49738598 gaggttgttggaagaatatcaggtgacacagttcttattcaagatgccatgggagagaaggtatt 49738534  T

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Target: chr2 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 19 - 75
Target Start/End: Original strand, 5821155 - 5821211
Alignment:
Q  19 tggagaggttgttggaagaatgtctggtgatactgttcttattcaagatgccatggg 75  Q
    |||||||||| ||||||||||||||||||||||  |||| |||||||||||||||||    
T  5821155 tggagaggttattggaagaatgtctggtgataccattctcattcaagatgccatggg 5821211  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 30 - 86
Target Start/End: Original strand, 5764242 - 5764298
Alignment:
Q  30 ttggaagaatgtctggtgatactgttcttattcaagatgccatgggtgagaaggtat 86  Q
    |||| |||||||||||||| ||  |||| ||||||||||||||||| || |||||||    
T  5764242 ttggtagaatgtctggtgacacaattctcattcaagatgccatgggagaaaaggtat 5764298  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 200 - 234
Target Start/End: Complemental strand, 14314782 - 14314748
Alignment:
Q  200 tggacatctggagcgtgaccctagtggcctgatag 234  Q
    ||||||||||||| |||||||||||||||||||||    
T  14314782 tggacatctggagtgtgaccctagtggcctgatag 14314748  T

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