View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16967_low_28 (Length: 317)
Name: NF16967_low_28
Description: NF16967
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16967_low_28 |
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Alignment Details
Target: chr1 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 74 - 302
Target Start/End: Complemental strand, 16159869 - 16159641
Alignment:
| Q |
74 |
atatacttgataataccctttccaaatgtttacttctccgatgtgggacttgtattcaattgatttataggatgccttattgaaggg-ttttcggttcaa |
172 |
Q |
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| T |
16159869 |
atatacttgataataccctttccaaatgtttaattctccgatgtgggacttgtattcaattgatttataggatgccttattgaaggggttttcggttcaa |
16159770 |
T |
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| Q |
173 |
aaattgcctataggtatttgactggatgctttatgtgtatgaaaaaccatgacatgtataaagtaacgtaagaatgaatcagaaaagagagtatgaaaaa |
272 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16159769 |
aaattgcctataggtatttgactggatgctttatgtgtatgaaaa-ccatgacatgtataaagtaacgtaagaatgaatcagaaaagagagtatgaaaaa |
16159671 |
T |
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| Q |
273 |
ccatggcatacataaagtaagtaagtaact |
302 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
16159670 |
ccatggcatacataaagtaagtaagtaact |
16159641 |
T |
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