View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16967_low_3 (Length: 682)
Name: NF16967_low_3
Description: NF16967
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16967_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 642; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 642; E-Value: 0
Query Start/End: Original strand, 18 - 671
Target Start/End: Complemental strand, 42926670 - 42926017
Alignment:
| Q |
18 |
gatgttaggggaaccacctcatcgtacaaatccaaccgtacacgttccaccatggccaacgttgaacaatcccacggcggagatcttttcacctttaaca |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42926670 |
gatgttaggggaaccacctcatcgtacaaatccaaccgtacacgttccaccatggccaacgttgaacaatcccacggcggagatcttttcacctttaaca |
42926571 |
T |
|
| Q |
118 |
tcaaacgacgattattctcagttctacatgcaagaagcgctaagcgcttttcaacactatgttaacgaaaacaacgactccgattccgactcggagattt |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42926570 |
tcaaacgacgattattctcagttctacatgcaagaagcgctaagcgcttttcaacactatgttaacgaaaacaacgactccgattccgactcggagattt |
42926471 |
T |
|
| Q |
218 |
ttccgactcatgaatcggtggattcgtattctaacgatcatttccgcatgttcgagttcaagattcggcgatgcgcacgtggcaggtctcatgactggac |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
42926470 |
ttccgactcatgaatcggtggattcgtattctaacgatcatttccgcatgttcgagttcaagattcgtcgatgcgcacgtggcaggtctcatgactggac |
42926371 |
T |
|
| Q |
318 |
ggagtgtcctttttctcatcccggcgagaaagctcaccgccgtgacccgagaaagtataactactccggcacttcatgtcctgattttcgtaaaggaagt |
417 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42926370 |
ggagtgtcctttttctcatcccggcgagaaagctcgccgccgtgacccgagaaagtataactactccggcacttcatgtcctgattttcgtaaaggaagt |
42926271 |
T |
|
| Q |
418 |
tgcaagaaaggtgattcgtgtgagtttgctcatggtgttttcgagtgttggcttcatccttcgcgttaccgtactcagccgtgtaaagacggaaccagtt |
517 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42926270 |
tgcaagaaaggtgattcgtgtgagtttgctcatggtgttttcgagtgttggcttcatccttcgcgttaccgtactcagccgtgtaaagacggaaccagtt |
42926171 |
T |
|
| Q |
518 |
gtcgccggccagtttgttttttcgctcacacgacagagcaacttagggctccgactcaacagagtccccgcagtgtgccctccgttgattcgtacgacgg |
617 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42926170 |
gtcgccggccagtttgttttttcgctcacacgacagagcaacttagggctccgactcaacagagtccccgcagtgtgccctccgttgattcgtacgacgg |
42926071 |
T |
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| Q |
618 |
ttctcctctcaggcttgcttttgagtcttcctgtgtgaaaactcttcagttcat |
671 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
42926070 |
ttctcctctcaggcttgcttttgagtcttcctgtgtgaaaactcttcaattcat |
42926017 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 130; Significance: 5e-67; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 130; E-Value: 5e-67
Query Start/End: Original strand, 252 - 549
Target Start/End: Original strand, 34340157 - 34340454
Alignment:
| Q |
252 |
cgatcatttccgcatgttcgagttcaagattcggcgatgcgcacgtggcaggtctcatgactggacggagtgtcctttttctcatcccggcgagaaagct |
351 |
Q |
| |
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||||||||||||||||| |||||||||||| | ||||||||||||| || || |||||||||||||||||||| | | ||||||||||||||||| |
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| T |
34340157 |
cgatcatttccgcatgtacgagttcaagataagaagatgcgcacgtggaagatcacatgactggacggagtgtccatacgcacatcccggcgagaaagca |
34340256 |
T |
|
| Q |
352 |
caccgccgtgacccgagaaagtataactactccggcacttcatgtcctgattttcgtaaaggaagttgcaagaaaggtgattcgtgtgagtttgctcatg |
451 |
Q |
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| T |
34340257 |
cgccgccgtgatccgaggaagtttcattactccggtacggcgtgtcctgattttcgtaaaggtaactgtaagaaaggtgacgcgtgtgaacacgcgcatg |
34340356 |
T |
|
| Q |
452 |
gtgttttcgagtgttggcttcatccttcgcgttaccgtactcagccgtgtaaagacggaaccagttgtcgccggccagtttgttttttcgctcacacg |
549 |
Q |
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|||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||| |||||||||| ||||| || |||||||||||| |
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| T |
34340357 |
gtgttttcgagtgttggcttcatcctgcacgttaccgtactcagccgtgtaaagacggaaccagctgtcgccggcgtgtttgcttcttcgctcacacg |
34340454 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 259 - 513
Target Start/End: Original strand, 47893776 - 47894033
Alignment:
| Q |
259 |
ttccgcatgttcgagttcaagattcggcgatgcgcacgtggcaggtctcatgactggacggagtgtcctttttctcatcccggcgagaaagctcaccgcc |
358 |
Q |
| |
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||||| |||||||| |||||| |||| |||| |||||| ||||| |||||||||||||| ||||| | ||||||||||| || ||||||| ||| |
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| T |
47893776 |
ttccgaatgttcgaattcaaggttcgaaaatgccaacgtggtaggtcccatgactggacggactgtccatactctcatcccggtgaaaaagctcgccgga |
47893875 |
T |
|
| Q |
359 |
gtgacccgagaaagtataactactccggcacttcatgtcctgattttcgtaaa---ggaagttgcaagaaaggtgattcgtgtgagtttgctcatggtgt |
455 |
Q |
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| T |
47893876 |
gagaccctcaaaaatacaattattccggcaatccttgcccggagtttcgcaaattaggaaactgcaccaaaggtgattcttgccacttcgctcatggtgt |
47893975 |
T |
|
| Q |
456 |
tttcgagtgttggcttcatccttcgcgttaccgtactcagccgtgtaaagacggaacc |
513 |
Q |
| |
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||| || || |||||||||||||| |||||| | ||||||| ||||| ||||||||| |
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| T |
47893976 |
ttttgaatgctggcttcatccttctcgttacagaactcagctttgtaacgacggaacc |
47894033 |
T |
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