View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16967_low_30 (Length: 311)
Name: NF16967_low_30
Description: NF16967
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16967_low_30 |
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Alignment Details
Target: chr4 (Bit Score: 238; Significance: 1e-132; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 1 - 300
Target Start/End: Original strand, 51198307 - 51198618
Alignment:
| Q |
1 |
atgggtaatatggtggctggtctggggtgatagactcgaatccaatattaggttttcttttattgagactaattcatcattacaaatccggcttgtaaag |
100 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| | |
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| T |
51198307 |
atgggtaatatggtggctggtctgggttgatagactcgaatccaatattaggttttcttttattgagagtaattcatcattacaaatccggcttgtaagg |
51198406 |
T |
|
| Q |
101 |
tgtaggatgacctgaatcagtgattaggnnnnnnnacattttcatatcatgctt------------gaaatcctaaaatctattttttccccttttgatt |
188 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
51198407 |
tgtaggatgacctgaatcagtgattaggtttttttacattttcatatcatgcttcatccagtggtggaaatcctaaaatctattttttccccttttgatt |
51198506 |
T |
|
| Q |
189 |
tcaggtgggacagtttatacagttaatggctactttctttggaggttttgtgatagcattcatcaagggatggcttttaactgttgtcatgatgtcttgt |
288 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51198507 |
tcaggtgggacagtttatacagttaatggctactttctttggaggttttgtgatagcattcatcaagggatggcttttaactgttgtcatgatgtcttgt |
51198606 |
T |
|
| Q |
289 |
attccacttctt |
300 |
Q |
| |
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|||||||||||| |
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| T |
51198607 |
attccacttctt |
51198618 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 186 - 300
Target Start/End: Complemental strand, 29938386 - 29938272
Alignment:
| Q |
186 |
atttcaggtgggacagtttatacagttaatggctactttctttggaggttttgtgatagcattcatcaagggatggcttttaactgttgtcatgatgtct |
285 |
Q |
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||||||||||||||||||||||||||| |||| |||||| | ||||||||||| |||||||||| |||||||||||| |||||||||||||| | | | |
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| T |
29938386 |
atttcaggtgggacagtttatacagtttgtggcaactttcataggaggttttgtcatagcattcactaagggatggcttctaactgttgtcatgctattt |
29938287 |
T |
|
| Q |
286 |
tgtattccacttctt |
300 |
Q |
| |
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|||| ||||||||| |
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| T |
29938286 |
agtataccacttctt |
29938272 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 185 - 300
Target Start/End: Original strand, 51144560 - 51144675
Alignment:
| Q |
185 |
gatttcaggtgggacagtttatacagttaatggctactttctttggaggttttgtgatagcattcatcaagggatggcttttaactgttgtcatgatgtc |
284 |
Q |
| |
|
||||||||||||||||||| |||||||| ||| | |||||| | ||||||||||| |||||||||| || ||||||||| |||||||||||||| | || |
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| T |
51144560 |
gatttcaggtgggacagttcatacagtttatgtcaactttcataggaggttttgtcatagcattcacaaaaggatggcttctaactgttgtcatgctatc |
51144659 |
T |
|
| Q |
285 |
ttgtattccacttctt |
300 |
Q |
| |
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| |||| ||||||||| |
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| T |
51144660 |
tagtataccacttctt |
51144675 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 186 - 297
Target Start/End: Original strand, 51155700 - 51155811
Alignment:
| Q |
186 |
atttcaggtgggacagtttatacagttaatggctactttctttggaggttttgtgatagcattcatcaagggatggcttttaactgttgtcatgatgtct |
285 |
Q |
| |
|
||||||||||||||||||||||||||| |||| ||||| | |||| |||||| ||| |||||| |||||||||||| ||||||| |||||| | ||| |
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| T |
51155700 |
atttcaggtgggacagtttatacagtttgtggcaacttttataggagcttttgtcatatcattcactaagggatggcttctaactgtcgtcatgctatct |
51155799 |
T |
|
| Q |
286 |
tgtattccactt |
297 |
Q |
| |
|
|||| |||||| |
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|
| T |
51155800 |
agtataccactt |
51155811 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 191 - 269
Target Start/End: Original strand, 36284930 - 36285008
Alignment:
| Q |
191 |
aggtgggacagtttatacagttaatggctactttctttggaggttttgtgatagcattcatcaagggatggcttttaac |
269 |
Q |
| |
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|||| |||||||| ||||||| | |||| |||||| ||||||| |||||||||||||| | |||||||||||| |||| |
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| T |
36284930 |
aggtaggacagttgatacagtcagtggcaactttcattggaggctttgtgatagcatttgttaagggatggcttctaac |
36285008 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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