View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16967_low_36 (Length: 275)
Name: NF16967_low_36
Description: NF16967
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16967_low_36 |
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Alignment Details
Target: chr3 (Bit Score: 184; Significance: 1e-99; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 17 - 264
Target Start/End: Original strand, 29069366 - 29069624
Alignment:
| Q |
17 |
agatatgtcgtaggtcatgtaggccgacctgatttataaaccacatggggtttatgttaacaccataattgtcatgtattaaactt----------atgt |
106 |
Q |
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| T |
29069366 |
agatatgtcgtaggtcatgtaggccgacctgacttataaaccacatggggtttatgttaacaccgtaattgccacgtattaaacttccgttaacttatgt |
29069465 |
T |
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| Q |
107 |
tatgctttatgacttgaggactaaaacatgaatctttttaaaaagataaag-accaaaacacatttttggttaatgataaaggaccaaatatatctatcg |
205 |
Q |
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| T |
29069466 |
tatgctttatgactaaaggactaaaacatgaatctttttaaaaagataaaggaccaaaacacatttttgattaatgataaaggaccaaatatatctatca |
29069565 |
T |
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| Q |
206 |
gtagaatgattaaaaagtaaatatccaatttattagaaaaggataaagatgttgttcat |
264 |
Q |
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| T |
29069566 |
gtagaatgattaaaaagtaaatatccaatttattagaaaaggataaagatgttgttcat |
29069624 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 130 - 176
Target Start/End: Complemental strand, 39559952 - 39559905
Alignment:
| Q |
130 |
aaacatgaatctttttaaaaagata-aagaccaaaacacatttttggt |
176 |
Q |
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| T |
39559952 |
aaacatgaatctttttaaaaagatataggaccaaaacacaattttggt |
39559905 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 125 - 166
Target Start/End: Complemental strand, 43005031 - 43004989
Alignment:
| Q |
125 |
gactaaaacatgaatctttttaaaaagataaa-gaccaaaaca |
166 |
Q |
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| T |
43005031 |
gactaaaacatgaatctttttaaaaagataaaggaccaaaaca |
43004989 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 98 - 150
Target Start/End: Complemental strand, 37936425 - 37936373
Alignment:
| Q |
98 |
aacttatgttatgctttatgacttgaggactaaaacatgaatctttttaaaaa |
150 |
Q |
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| T |
37936425 |
aacttatgttatgatttatgactaaaggactaaatcgtgaatcttttaaaaaa |
37936373 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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