View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16967_low_42 (Length: 237)
Name: NF16967_low_42
Description: NF16967
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16967_low_42 |
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Alignment Details
Target: chr3 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 8 - 222
Target Start/End: Complemental strand, 38154381 - 38154167
Alignment:
| Q |
8 |
ccaagaatatattgacaatttccttgaagttaatctgcaatgcttataatgaaagtctaatttttattttatattcatacacatacaccagaactaatgt |
107 |
Q |
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| T |
38154381 |
ccaaaaatatattgacaatttacttgaagttaatctgcaatgcttataatgaaagtctaatttttattttatattcatacacatacaccagaactaatgt |
38154282 |
T |
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| Q |
108 |
tacactaagaagaaagggatcaaattatatgctacagaatttatgctagcaaaaagacagtatctaagatggagcaccaagatatgaggcaagtctcaaa |
207 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
38154281 |
tacactaagaagaaagggatcaaattatatgctacagaatttatgctagcaaaaagacagtatctaagatggagcaccaagatatgaggcaagtcgcaaa |
38154182 |
T |
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| Q |
208 |
atgtcactgaatatt |
222 |
Q |
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||||| ||||||||| |
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| T |
38154181 |
atgtcgctgaatatt |
38154167 |
T |
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