View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16967_low_5 (Length: 602)
Name: NF16967_low_5
Description: NF16967
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16967_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 467; Significance: 0; HSPs: 8)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 467; E-Value: 0
Query Start/End: Original strand, 19 - 558
Target Start/End: Complemental strand, 24684524 - 24683972
Alignment:
| Q |
19 |
taccacacattcaaaccctcctcagcctccaaaaccggaaccacaggacacatctcaggcgtaagatttgtaaactgcaatgcagacatcatgcggcttg |
118 |
Q |
| |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24684524 |
taccacacattcaaacgctcctcagcctccaaaaccggaaccacaggacacatctcaggcgtaagatttgtaaactgcaatgcagacatcatgcggcttg |
24684425 |
T |
|
| Q |
119 |
gtttggttcatatttagtatttttgtttcttcttattttgcttgctgtatatatgtaattgttcttccaagtaaaggtaggagataaaattgaataaatg |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24684424 |
gtttggttcatatttagtatttttgtttcttcttattttgcttgctgtatatatgtaattgttcttccaagtaaaggtaggagataaaattgaataaatg |
24684325 |
T |
|
| Q |
219 |
aatacagggtattttactttctcatgtcagctaaattttaattactttctctaagcatgtaaagcaattctgctttgttttccttattaattgagcagaa |
318 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24684324 |
aatacggggtattttactttctcatgtcagctaaattttaattactttctctaagcatgtaaagcaattctgctttgttttccttattaattgagcagaa |
24684225 |
T |
|
| Q |
319 |
tgctgtgtatgtttcaatagtttattgatatatggaaaatcaatgtcaa--atagtcttctttttaatcagtgttgtgtaatagcggtgctatatcccta |
416 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24684224 |
tgctgtgtatgtttcaatagtttattgatatatggaaaatcaatgtcaaatatagtcttctttttaatcagtgttgtgtaatagcggtgctatatcccta |
24684125 |
T |
|
| Q |
417 |
tagtgtagctaaattttaacaaactgttattgttccgtggtacataatttagtacaaagcattgtcac---------atagcagtgctataaaactgtag |
507 |
Q |
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| T |
24684124 |
tagtgtagctaaattttaacaaactgttattgttccgtggtacataatttagtacaaagtattgtcacatagcagttatagcagtgatataaaactgtag |
24684025 |
T |
|
| Q |
508 |
cataggaaaatctgaacaaac--gtattatttgggatctgcaattggcaacac |
558 |
Q |
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||||| | |||| |||||||| |||||||||| ||||||||||||||||||| |
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| T |
24684024 |
catagaagaatccgaacaaactggtattatttgagatctgcaattggcaacac |
24683972 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 426; E-Value: 0
Query Start/End: Original strand, 24 - 558
Target Start/End: Complemental strand, 24656290 - 24655752
Alignment:
| Q |
24 |
cacattcaaaccctcctcagcctccaaaaccggaaccacaggacacatctcaggcgtaagatttgta----aactgcaatgcagacatcatgcggcttgg |
119 |
Q |
| |
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||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||| |
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| T |
24656290 |
cacattcaaacactcctcagcctccaaatccggaaccacaggacacatctcaggcgtaagatttgtatgtaaactgcaatgcagacatcatgtggcttgg |
24656191 |
T |
|
| Q |
120 |
tttggttcatatttagtatttttgtttcttcttattttgcttgctgtatatatgtaattgttcttccaagtaaaggtaggagataaaattgaataaatga |
219 |
Q |
| |
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|||| ||| ||||||||| ||| ||||||| ||||||||||||||||||||||||||||||||| |||||||| | ||| || ||||||||||||||||| |
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| T |
24656190 |
tttgtttcgtatttagtagtttagtttctttttattttgcttgctgtatatatgtaattgttctaccaagtaatgctagaaggtaaaattgaataaatga |
24656091 |
T |
|
| Q |
220 |
atacagggtattttactttctcatgtcagctaaattttaattactttctctaagcatgtaaagcaattctgctttgttttccttattaattgagcagaat |
319 |
Q |
| |
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||||||||||||||| ||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24656090 |
atacagggtattttaatttcttatgtcagctaaattttaattactttctttaagcatgtaaagcaattctgctttgttttccttattaattgagcagaac |
24655991 |
T |
|
| Q |
320 |
gctgtgtatgtttcaatagtttattgatatatggaaaatcaatgtcaaatagtcttctttttaatcagtgttgtgtaatagcggtgctatatccctatag |
419 |
Q |
| |
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| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||| | ||||||||||||||||| |
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| T |
24655990 |
gatgtgtatgtttcaatagtttattgatatatggaaaatcaatgtcaaatagtctgctttttaatcagtgttgtctaatggaagtgctatatccctatag |
24655891 |
T |
|
| Q |
420 |
tgtagctaaattttaacaaactgttattgttccgtggtacataatttagtacaaagcattgtcacatagcagtgctataaaactgtagcataggaaaatc |
519 |
Q |
| |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24655890 |
tgtagctgaattttaacaaactgttattgttccgtggtacataatttagtacaaagcattgtcacatagcagtgctataaaactgtagcataggaaaatc |
24655791 |
T |
|
| Q |
520 |
tgaacaaacgtattatttgggatctgcaattggcaacac |
558 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||| |
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| T |
24655790 |
tgaacaaacgtattatttgggatctgcaattggcaacac |
24655752 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 250 - 369
Target Start/End: Complemental strand, 24678849 - 24678730
Alignment:
| Q |
250 |
taaattttaattactttctctaagcatgtaaagcaattctgctttgttttccttattaattgagcagaatgctgtgtatgtttcaatagtttattgatat |
349 |
Q |
| |
|
|||||||| |||||||| |||| ||||| || ||||||| ||| ||||||||||||||| |||| |||| |||||||||||||| ||||||| |||| |
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| T |
24678849 |
taaattttgattactttgactaaaaatgtagagaaattctgttttcttttccttattaattcagcataatgtagtgtatgtttcaatggtttatttatat |
24678750 |
T |
|
| Q |
350 |
atggaaaatcaatgtcaaat |
369 |
Q |
| |
|
||||||||||||||| |||| |
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| T |
24678749 |
atggaaaatcaatgtaaaat |
24678730 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 259 - 343
Target Start/End: Complemental strand, 24646535 - 24646451
Alignment:
| Q |
259 |
attactttctctaagcatgtaaagcaattctgctttgttttccttattaattgagcagaatgctgtgtatgtttcaatagtttat |
343 |
Q |
| |
|
|||||||||||||| |||||| ||||||||| ||||||||||||||||||||| |||||| |||| |||||||||| ||||||| |
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| T |
24646535 |
attactttctctaaacatgtattgcaattctgttttgttttccttattaattgaccagaattctgtttatgtttcaacagtttat |
24646451 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 284 - 364
Target Start/End: Original strand, 18158148 - 18158228
Alignment:
| Q |
284 |
aattctgctttgttttccttattaattgagcagaatgctgtgtatgtttcaatagtttattgatatatggaaaatcaatgt |
364 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||| ||| ||||||||||||||| || |||| |||||||||||||| |
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| T |
18158148 |
aattctgttttgttttccttattaattgagcagaataatgtatatgtttcaatagttagtttatatgtggaaaatcaatgt |
18158228 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 296 - 344
Target Start/End: Complemental strand, 24714746 - 24714698
Alignment:
| Q |
296 |
ttttccttattaattgagcagaatgctgtgtatgtttcaatagtttatt |
344 |
Q |
| |
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|||||||| |||||||||||| ||||||||||||||||||||||||||| |
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| T |
24714746 |
ttttcctttttaattgagcaggatgctgtgtatgtttcaatagtttatt |
24714698 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 296 - 364
Target Start/End: Complemental strand, 24692674 - 24692607
Alignment:
| Q |
296 |
ttttccttattaattgagcagaatgctgtgtatgtttcaatagtttattgatatatggaaaatcaatgt |
364 |
Q |
| |
|
||||||||||||||| ||| ||||||||||| ||||||||| | |||| |||||||||||||||||| |
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| T |
24692674 |
ttttccttattaattcagc-gaatgctgtgtctgtttcaatggattatctgtatatggaaaatcaatgt |
24692607 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 284 - 337
Target Start/End: Complemental strand, 24720254 - 24720199
Alignment:
| Q |
284 |
aattctgctttgttttccttattaattgagcagaatgc--tgtgtatgtttcaata |
337 |
Q |
| |
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||||||| ||||||||||||||||||||||||| || | |||||||||||||||| |
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| T |
24720254 |
aattctgttttgttttccttattaattgagcaggatactgtgtgtatgtttcaata |
24720199 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 53; Significance: 4e-21; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 284 - 364
Target Start/End: Original strand, 22014230 - 22014310
Alignment:
| Q |
284 |
aattctgctttgttttccttattaattgagcagaatgctgtgtatgtttcaatagtttattgatatatggaaaatcaatgt |
364 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||| |||| ||||||||||||||| || |||| |||||||||||||| |
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| T |
22014230 |
aattctgttttgttttccttattaattgagcagaatactgtatatgtttcaatagttagtttatatgtggaaaatcaatgt |
22014310 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 559 - 602
Target Start/End: Original strand, 22956229 - 22956272
Alignment:
| Q |
559 |
gttgtgttagttgaatctcgccctgtttttgagtatttggaagc |
602 |
Q |
| |
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|||||||||| |||||||| |||||||||||||||||||||||| |
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| T |
22956229 |
gttgtgttagctgaatctctccctgtttttgagtatttggaagc |
22956272 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 49; Significance: 1e-18; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 284 - 364
Target Start/End: Original strand, 15282536 - 15282616
Alignment:
| Q |
284 |
aattctgctttgttttccttattaattgagcagaatgctgtgtatgtttcaatagtttattgatatatggaaaatcaatgt |
364 |
Q |
| |
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||||||| |||||||||||||||||||||||||||| ||| ||||||||||||||| || |||| |||||||||||||| |
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| T |
15282536 |
aattctgttttgttttccttattaattgagcagaataatgtatatgtttcaatagttagtttatatgtggaaaatcaatgt |
15282616 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 49; Significance: 1e-18; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 284 - 364
Target Start/End: Original strand, 24224034 - 24224114
Alignment:
| Q |
284 |
aattctgctttgttttccttattaattgagcagaatgctgtgtatgtttcaatagtttattgatatatggaaaatcaatgt |
364 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||| ||| ||||||||||||||| || |||| |||||||||||||| |
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| T |
24224034 |
aattctgttttgttttccttattaattgagcagaataatgtatatgtttcaatagttagtttatatgtggaaaatcaatgt |
24224114 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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