View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16967_low_6 (Length: 589)
Name: NF16967_low_6
Description: NF16967
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16967_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 391; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 1 - 467
Target Start/End: Original strand, 38461663 - 38462120
Alignment:
| Q |
1 |
agtttgttattcccctgcatagaatttgttgttgtctgccatacttttttcatactttttgtgtgttctcatctatgaacacctgatacgacattaacac |
100 |
Q |
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|||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||| |||||| |
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| T |
38461663 |
agtttgttattcccctacatagattttgttgttgtctgccatacttttttcatactttttgtgtgttttcatctacgaacacctgatacgacactaacac |
38461762 |
T |
|
| Q |
101 |
aacgacattgggtaataatttaaggaaataaattaattgaaaatattatctcatgtgtcagtgttggacaccgacacgtgttgaacactagacacatctt |
200 |
Q |
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| T |
38461763 |
gacgacattgggtaataatttaaggaaataaattaattgaaaatattatctcatgtgtcagtgttggacaccgacacgtgttgaacactagacacatctt |
38461862 |
T |
|
| Q |
201 |
cgatcgtaagtgttggtgctatatagaggtcgtcatgttctcccattggtacttattttgttgagattgttgtagattgacgcccataatttcttctatt |
300 |
Q |
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| T |
38461863 |
cgatcataagtgtcggtgctatatagaggtcgtcatgttctttcattggtactcattttgttgagattgttgtagattgacgcccataatttcttctatt |
38461962 |
T |
|
| Q |
301 |
tcagattggaaaagaatctaatgcaacttttcccttctcaattgtccaaagtatttaaaggaatgtgaaggaagatcataccatcagtttgagttagagc |
400 |
Q |
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| T |
38461963 |
tcagattggaaaagaatctaatgcaacttttcccttctcaattgtccaaagtatttaaaggaatgtgaaggaagatcataccatcagtttgagttagagc |
38462062 |
T |
|
| Q |
401 |
ttcatcatatgtttttgttcatcttgaccatcttgaccttacaaagtaactatcctcctaagtagca |
467 |
Q |
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| T |
38462063 |
ttcatcatatgtttttgtt---------catcttgaccttacaaagtaactatcctcctaagtagca |
38462120 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 523 - 571
Target Start/End: Original strand, 38462176 - 38462224
Alignment:
| Q |
523 |
gcaccatcctcctaagaagtctaaaaccacttctaaggacagactagct |
571 |
Q |
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| T |
38462176 |
gcactatcctcctaagtagtctaaaaccacttctaaggacagactagct |
38462224 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 83; Significance: 5e-39; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 244 - 400
Target Start/End: Original strand, 39459911 - 39460075
Alignment:
| Q |
244 |
cattggtacttattttgttgagattgttgtagattgacg-------cccataatttcttctatttcagattggaaaagaatctaatgcaactttt-ccct |
335 |
Q |
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|||||||||| ||||||||| |||||||||||||||| | | ||| ||||||||||||| || |||||||||||||| || ||| |||| |||| |
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| T |
39459911 |
cattggtactcattttgttgggattgttgtagattgatgattgacacacatgatttcttctattttaggttggaaaagaatcttatacaagttttgccct |
39460010 |
T |
|
| Q |
336 |
tctcaattgtccaaagtatttaaaggaatgtgaaggaagatcataccatcagtttgagttagagc |
400 |
Q |
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| T |
39460011 |
tctcaattgtccaaagtatttaaaggaatgtgaaggaagatcatactatcagtttgagtttgagc |
39460075 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 289 - 378
Target Start/End: Original strand, 39157923 - 39158013
Alignment:
| Q |
289 |
atttcttctatttcagattggaaaagaatctaatgcaa-cttttcccttctcaattgtccaaagtatttaaaggaatgtgaaggaagatca |
378 |
Q |
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| T |
39157923 |
atttcttctatttcaggttggaaaagaatcttatacaatctttgcccttctcaattgtccaaagtatttaaaggagtgtgaaggaagatca |
39158013 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 283 - 378
Target Start/End: Complemental strand, 39481902 - 39481806
Alignment:
| Q |
283 |
cccataatttcttctatttcagattggaaaagaatctaatgcaa-cttttcccttctcaattgtccaaagtatttaaaggaatgtgaaggaagatca |
378 |
Q |
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| T |
39481902 |
cccatgatttcttctatttcaggttggaaaagaatcttatacaatctttgcccttctcaattgtccaaagtatttaaattaatgtgaaggaagatca |
39481806 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 177 - 221
Target Start/End: Complemental strand, 46550791 - 46550747
Alignment:
| Q |
177 |
cgtgttgaacactagacacatcttcgatcgtaagtgttggtgcta |
221 |
Q |
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| T |
46550791 |
cgtgttggacaccagacacaccttcgatcataagtgttggtgcta |
46550747 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 154 - 182
Target Start/End: Complemental strand, 25652038 - 25652010
Alignment:
| Q |
154 |
tgtgtcagtgttggacaccgacacgtgtt |
182 |
Q |
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| T |
25652038 |
tgtgtcagtgttggacaccgacacgtgtt |
25652010 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 126 - 177
Target Start/End: Original strand, 4796442 - 4796491
Alignment:
| Q |
126 |
aaataaattaattgaaaatattatctcatgtgtcagtgttggacaccgacac |
177 |
Q |
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| T |
4796442 |
aaataaattaattgaacata--atcacatgtgtcagtgtcggacaccgacac |
4796491 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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