View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16967_low_7 (Length: 542)
Name: NF16967_low_7
Description: NF16967
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16967_low_7 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 443; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 443; E-Value: 0
Query Start/End: Original strand, 13 - 542
Target Start/End: Complemental strand, 22956955 - 22956423
Alignment:
| Q |
13 |
aatataaaaatggttaaggaaaaataatagaatgatttttaatacttaattaattaagtaggtagttcacctaaccacgcatatgcggggaatggatttg |
112 |
Q |
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| T |
22956955 |
aatataaaaatggttaaggaaaaataatagaatgatttttaatacttaattaattaagtaggtagttcacctaaccacgcatatgcggggaatggatttg |
22956856 |
T |
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| Q |
113 |
ctcaacaatacgtcaataaaacttgcaaacctttaatgcgtaagtaaataaaacttgatttttgtgtgaaaaagtactccataagtcaataaaacttggg |
212 |
Q |
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| T |
22956855 |
ctcaacaatacgtcaataaaacttgcaaacctttaatgcgtaagtaaataaaacttgatttttgtttgaaaaagtactccataagtcaataaaacttggg |
22956756 |
T |
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| Q |
213 |
caaggctcaagaggcctaaactataagctgctattttagggacatttgctaacttcaagaaaattcctataggttgttagaaaaggaaaaagcttaatgg |
312 |
Q |
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| T |
22956755 |
caaggcccaagaggcctaaactataagctgctattttagggacatttgctaacttcaacaaaattcctataggttgttaggaaaggaaaaagcttaatgg |
22956656 |
T |
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| Q |
313 |
tacgatagttgagcgacgaaaagcaacgaatccactacaaccataggattatataccataaccattggatttaggctgtgttttaactcta------ttt |
406 |
Q |
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| T |
22956655 |
tacgatagttgagcgacgaaaagcaacgaatccactgcagccatagg---atatatcataaccattggatttaggctgtgttttaactctatttattttt |
22956559 |
T |
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| Q |
407 |
aaaatgtaaaaatcctaccaaccttttatcgtgtgtagtcgtgcgcatatatttcgcactatatagcaaggctggttaggaaataaccaaactctataat |
506 |
Q |
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| T |
22956558 |
aaaatgtaaaaatccttccaaccatttatcgtgtgtagtcgtgcgcatatatttcacactatgtagcaaggttggttaggaaataaccaaactttgtaat |
22956459 |
T |
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| Q |
507 |
atcaactcgattaatatggaaaggattcgaaattgt |
542 |
Q |
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| T |
22956458 |
atcaactcgattaatatggaaaggattcgaaattgt |
22956423 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 118; E-Value: 6e-60
Query Start/End: Original strand, 338 - 480
Target Start/End: Original strand, 42537917 - 42538065
Alignment:
| Q |
338 |
acgaatccactacaaccataggattatataccataaccattggatttaggctgtgttttaactctattta------aaatgtaaaaatcctaccaacctt |
431 |
Q |
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| T |
42537917 |
acgaatccactgcagccataggattatataccataaccattggatttaggctgtgttttaactctatttatttttaaaatgtaaaaatcctaccaacctt |
42538016 |
T |
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| Q |
432 |
ttatcgtgtgtagtcgtgcgcatatatttcgcactatatagcaaggctg |
480 |
Q |
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| T |
42538017 |
ttatcgtgtgtagtcgtgcgcatatatttcgcactatatagcaaggctg |
42538065 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 86; Significance: 7e-41; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 293 - 480
Target Start/End: Original strand, 17724975 - 17725168
Alignment:
| Q |
293 |
aaaaggaaaaagcttaatggtacgatagttgagcgacgaaaagcaacgaatccactacaaccataggattatataccataaccattggatttaggctgtg |
392 |
Q |
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| T |
17724975 |
aaaaggaaaaagcttaatggtacaatagttgaaagacgaaaagcaacgaatccactgcagccataggatcatatgcaataacctttggatttaggctgtg |
17725074 |
T |
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| Q |
393 |
ttttaactctattt-----aaaatgtaaaaatcctaccaaccttttatcgtgtgta-gtcgtgcgcatatatttcgcactatatagcaaggctg |
480 |
Q |
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| T |
17725075 |
ttttaattttatttatttaaaaatgtaaaaaacctaccagctttttatcgtgtgcaggtcgtacgcataactttcgcaccatatagcaaagctg |
17725168 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 298 - 483
Target Start/End: Original strand, 1933262 - 1933453
Alignment:
| Q |
298 |
gaaaaagcttaatggtacgatagttgagcgacgaaaagcaacgaatccactacaaccataggattatataccataaccattggatttaggctgtgtttta |
397 |
Q |
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| T |
1933262 |
gaaaaagcttaatggtacgatagctaggcgaagaaaatcatcgaatccactacagtcataggattatatataataaccattggatttaggttatatttta |
1933361 |
T |
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| Q |
398 |
actctattt------aaaatgtaaaaatcctaccaaccttttatcgtgtgtagtcgtgcgcatatatttcgcactatatagcaaggctggtt |
483 |
Q |
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| T |
1933362 |
aatttatttattttaaaaatgtaaaaattctaccggcgtgttattgtgtgcagtcgtgcgcatatattttgcactatatagcaaggatggtt |
1933453 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 85; Significance: 3e-40; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 295 - 407
Target Start/End: Original strand, 24053468 - 24053580
Alignment:
| Q |
295 |
aaggaaaaagcttaatggtacgatagttgagcgacgaaaagcaacgaatccactacaaccataggattatataccataaccattggatttaggctgtgtt |
394 |
Q |
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| T |
24053468 |
aaggaaaaagtttaatggtacaatagttgagtgacgaaaagcaacgaatcctctgcagccataggattatataccataaccattggatttaggttgtgtt |
24053567 |
T |
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| Q |
395 |
ttaactctattta |
407 |
Q |
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| T |
24053568 |
ttaactctattta |
24053580 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 76; Significance: 7e-35; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 296 - 480
Target Start/End: Complemental strand, 50558486 - 50558311
Alignment:
| Q |
296 |
aggaaaaagcttaatggtacgatagttgagcgacgaaaagcaacgaatccactacaaccataggattatataccataaccattggatttaggctgtgttt |
395 |
Q |
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| T |
50558486 |
aggaaaaagtttaatggtacgatagttgagcgacgaaaagcaacgaatccactgcagccataggattatata-------------ttttaggctgtgttt |
50558400 |
T |
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| Q |
396 |
taactctattt------aaaatgtaaaaatcctaccaaccttttatcgtgtgtagtcgtgcgcatatatttcgcactatatagcaaggctg |
480 |
Q |
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| T |
50558399 |
taactttatttattttaaaaatgtaaaaatcctaccaaccttttatcgtgtg-cgtcgtg-gcatatacttcgcattatatagcaaggctg |
50558311 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 305 - 481
Target Start/End: Complemental strand, 20761264 - 20761081
Alignment:
| Q |
305 |
cttaatggtacgatagttgagcgacgaaaagcaacgaatccactacaaccataggattatataccataaccattggatttaggctgtgttttaactcta- |
403 |
Q |
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| T |
20761264 |
cttaatggtacgatggttaaacaacaaaaagcaacgaattcactgcagccataggatcatatacaataaccatcagatttaggctgtgctttaatttaat |
20761165 |
T |
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| Q |
404 |
-----tttaaaatgtaaaaatcctaccaaccttttatcgtgtg-tagtcgtgcgcatatatttcgcactatatagcaaggctgg |
481 |
Q |
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| T |
20761164 |
ttaattttaaaatttaagaattctaccaaccttttatcttgtgcaagtcgtgcacatatatttcgtaccatatagcaaggctgg |
20761081 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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