View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16967_low_8 (Length: 531)
Name: NF16967_low_8
Description: NF16967
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16967_low_8 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 206; Significance: 1e-112; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 286 - 515
Target Start/End: Original strand, 441470 - 441699
Alignment:
| Q |
286 |
atagatccataaataattaggcttaggtaatgtgggttgagtcgggttgactcactaggtttgtatgccgatccacacccatgaacacaactaaacatga |
385 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
441470 |
atagatccataaataattaggcttaggcaatgtgggttgagtcgggttgactcactaggtttgtatgccgatccacacccatgaacacaactaaacatga |
441569 |
T |
|
| Q |
386 |
gttttgtgttacctttataccaaaatctaaattttgaaaaagacttctcaattaaagatgttttagggttcatgtgacccattcaatctgattcgataat |
485 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||| |
|
|
| T |
441570 |
gttgtgtgttacctttataccaaaatctaaattttgaaaaagacttctcaattaaagatgttttagggtacaggtgacccattcaatctgattcgataat |
441669 |
T |
|
| Q |
486 |
ccaaatgaagctaaattttattttatttca |
515 |
Q |
| |
|
|||||||||||||| || |||||||||||| |
|
|
| T |
441670 |
ccaaatgaagctaacttctattttatttca |
441699 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 178; E-Value: 9e-96
Query Start/End: Original strand, 58 - 290
Target Start/End: Original strand, 440775 - 441022
Alignment:
| Q |
58 |
atacagaaaaggatgttttgagctttatggagaaaaggga---------------agattgtagcgataagtagtaaaatttctggtgccacaagttagg |
142 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
440775 |
atacagaaaaggatgttttgagctttatggagaaaagggatatagacagacctaaagattgtagcgataagtactaaaatttctggtgccacaagttagg |
440874 |
T |
|
| Q |
143 |
taattaaatgagaaaatccattcctatctatgaagcagtaccgatatagacaagatgataaagaacacttggaaacccgtgataacaacacatattagac |
242 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| || |
|
|
| T |
440875 |
taattaaatgagaaaatccattcctatctatgaagcagtaccgatatagacaagatgataaataacacttggaaacccgtgataacaacacatattatac |
440974 |
T |
|
| Q |
243 |
accttcaatctaaaaaatatgtacttgccctccaataataagaataga |
290 |
Q |
| |
|
||||||||||||||||||||||||| |||| ||||||||||||||||| |
|
|
| T |
440975 |
accttcaatctaaaaaatatgtactagcccaccaataataagaataga |
441022 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University