View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16968_high_2 (Length: 299)
Name: NF16968_high_2
Description: NF16968
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16968_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 179; Significance: 1e-96; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 12 - 284
Target Start/End: Complemental strand, 39664781 - 39664524
Alignment:
| Q |
12 |
attcttgaatgtagcctaaaaaacccaa-aaataataaccgacactatttctaataaccccaccgtagccggctctaacgggcaagtctagacaactacc |
110 |
Q |
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| T |
39664781 |
attcttgaatgtagcctaaaaaacccaataaataataaccgacactatttctaataatcctaccgtagccggctctaacgggcaagtctagacaactacc |
39664682 |
T |
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| Q |
111 |
atcaattttaagaatgatgtaagaatgattactactgttccatttaatgagtctttcaccggacatagcattgaaaattaataaaaaagcaaattttgcg |
210 |
Q |
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| T |
39664681 |
atcaatgttaagaatgat-----------tactattgttccatttaatgagtctttcaccagacatagcattgaaa-ttaataaaaaagcaaattttgcg |
39664594 |
T |
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| Q |
211 |
gttatccacccaccatacttgaatattgaaaccatacttcgaattttgaggttattttcttgtgggtttatcct |
284 |
Q |
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|||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39664593 |
gttatccacc----atacttcaatattgaaaccatacttcgaattttgaggttattttcttgtgggtttatcct |
39664524 |
T |
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