View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16968_high_3 (Length: 297)
Name: NF16968_high_3
Description: NF16968
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16968_high_3 |
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| [»] chr7 (2 HSPs) |
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| [»] scaffold0586 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 249; Significance: 1e-138; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 16 - 297
Target Start/End: Complemental strand, 38307690 - 38307403
Alignment:
| Q |
16 |
atgtaaagagcggcttttagggaagaagattgttgaaacatttgattgatttcatatgagccacaaaggcaagcttaaatacaaccattactccattaga |
115 |
Q |
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| T |
38307690 |
atgtaaagagcggcttttagggaagaagattgttgaaacatttgattgatttcatatgagccacaaaggcaagcttaaatacaaccattactccattaga |
38307591 |
T |
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| Q |
116 |
ggtaaaatagtaaactgacttaaaataaaactactat------ttagctaccaaactactaattccctgttacatgaactactatttagctgtatataac |
209 |
Q |
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| T |
38307590 |
ggtaaaatagtaaactgacataaaataaaactactatttaaaattaactaccaaactactaattccctgttacatgaactactatttagctgtatataac |
38307491 |
T |
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| Q |
210 |
taaaatttcctacaatatcgagaatagcgacactattgtgatatgaagcattgattgattactgttttgaagaaagcattaatcgatt |
297 |
Q |
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| T |
38307490 |
taaaatttcctacaatatcgagaatagcgacactattgtgatatgaagcattgattgattatttttttgaagaaagcattaatcgatt |
38307403 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 37 - 105
Target Start/End: Complemental strand, 5181038 - 5180970
Alignment:
| Q |
37 |
gaagaagattgttgaaacatttgattgatttcatatgagccacaaaggcaagcttaaatacaaccatta |
105 |
Q |
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| T |
5181038 |
gaagatgatttttgaaatgtttgattgatttcatatgaaccataaagacaaacttaaatacaactatta |
5180970 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 54; Significance: 5e-22; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 45 - 155
Target Start/End: Complemental strand, 27967607 - 27967505
Alignment:
| Q |
45 |
ttgttgaaacatttgattgatttcatatgagccacaaaggcaagcttaaatacaaccattactccattagaggtaaaatagtaaactgacttaaaataaa |
144 |
Q |
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| T |
27967607 |
ttgttgaaatgtttgattgatttcatatgagccacaaaggcaagcttaagtacaacc--------attaggggtaaaatagtaaaccgacataaaataaa |
27967516 |
T |
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| Q |
145 |
actactattta |
155 |
Q |
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|||| |||||| |
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| T |
27967515 |
actaatattta |
27967505 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 56 - 105
Target Start/End: Original strand, 28105145 - 28105194
Alignment:
| Q |
56 |
tttgattgatttcatatgagccacaaaggcaagcttaaatacaaccatta |
105 |
Q |
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| T |
28105145 |
tttgattgatttcatatgagccacaaaggcaagcttaagtacaaccatta |
28105194 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0586 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0586
Description:
Target: scaffold0586; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 61 - 103
Target Start/End: Complemental strand, 6106 - 6064
Alignment:
| Q |
61 |
ttgatttcatatgagccacaaaggcaagcttaaatacaaccat |
103 |
Q |
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| T |
6106 |
ttgatttcatatgaatcacaaaggcaagcttaaatacaaccat |
6064 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 57 - 151
Target Start/End: Original strand, 24094449 - 24094533
Alignment:
| Q |
57 |
ttgattgatttcatatgagccacaaaggcaagcttaaatacaaccattactccattagaggtaaaatagtaaactgacttaaaataaaactacta |
151 |
Q |
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| T |
24094449 |
ttgattgatttcat--gagccacaaaagcaagcttaaatacaa--------caattagaggtaaaataataaactgatgtaaaataaaactacta |
24094533 |
T |
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