View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16968_high_4 (Length: 296)
Name: NF16968_high_4
Description: NF16968
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16968_high_4 |
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Alignment Details
Target: chr7 (Bit Score: 197; Significance: 1e-107; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 10 - 286
Target Start/End: Original strand, 31213534 - 31213831
Alignment:
| Q |
10 |
gaagaaccatggtacccaatttcaccaagaatctagcttgttggcagattctcttcataa------------------caatcatttttcctcaacaagt |
91 |
Q |
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| T |
31213534 |
gaagaaccatggtacccaatttcaacaagaatctagcttgttggcagattctcttcataatactttgggttcgtttaacaatcatttttcctcaacaagt |
31213633 |
T |
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| Q |
92 |
tgctggtttttccaatgaag---cagttgctctgttgaaatggaaagatagctttgacaaccacagccaagctctgctgtcaacttggataagaactact |
188 |
Q |
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| T |
31213634 |
tgctggtttttccaatgaagaagcagttgctctgttgaaatggaaagatagctttgacaaccacagccaagctctgctgtcaacttggacaagaactacg |
31213733 |
T |
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| Q |
189 |
agtccatgcaactggaaaggagttcagtgtgacaaatccaaatcaatctctaccataaatcttgcaaattatggactaaaaggtaaactccacactct |
286 |
Q |
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| T |
31213734 |
agtccatgcaactgggaaggaattcaatgtgacaaatccaaatccatctctaccataaatcttgcaaattatggactaaaaggtaaactccacactct |
31213831 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 121 - 287
Target Start/End: Original strand, 31138259 - 31138428
Alignment:
| Q |
121 |
tgttgaaatggaaagatagctttgacaaccacagccaagctctgctgtcaacttggataagaactactagtccatgca---actggaaaggagttcagtg |
217 |
Q |
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|||| ||||||||| |||||||||||||||| ||||| |||| |||||||||||| || || || | | |||||| | ||||||||| || || |
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| T |
31138259 |
tgttaaaatggaaacatagctttgacaaccaaagccagtctctcttgtcaacttggaaaaataccacaaatacatgcacaaaatggaaaggaattttttg |
31138358 |
T |
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| Q |
218 |
tgacaaatccaaatcaatctctaccataaatcttgcaaattatggactaaaaggtaaactccacactctc |
287 |
Q |
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| T |
31138359 |
tgacaactcgaaatccatttctaccataaaccttgaaaattttggactaaaaggtacacttcactctctc |
31138428 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 126 - 287
Target Start/End: Original strand, 31181982 - 31182143
Alignment:
| Q |
126 |
aaatggaaagatagctttgacaaccacagccaagctctgctgtcaacttggataagaactactagtccatgcaactggaaaggagttcagtgtgacaaat |
225 |
Q |
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||||||||| ||||||||||||| | || |||||||| || ||||||||| || || || | |||||||| ||| ||||| |||| |||||||| | |
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| T |
31181982 |
aaatggaaaaatagctttgacaatccaagtcaagctctcttgccaacttggaaaaataccacaaatccatgcagatggcaaggaattcattgtgacaagt |
31182081 |
T |
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| Q |
226 |
ccaaatcaatctctaccataaatcttgcaaattatggactaaaaggtaaactccacactctc |
287 |
Q |
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| T |
31182082 |
ccaattcaattactaccataaaccttgaaagtttaggactaaaaggtacacttcactctctc |
31182143 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 126 - 287
Target Start/End: Original strand, 31100887 - 31101051
Alignment:
| Q |
126 |
aaatggaaagatagctttgacaaccacagccaagctctgctgtcaacttggataagaactactagtccatgcaac---tggaaaggagttcagtgtgaca |
222 |
Q |
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| T |
31100887 |
aaatggaaagctagctttgacaaccaaagtcaaagtatcttgtcaacttggaaaaataccacaaatccatgcagcaaatggagaggaattgagtgtgaca |
31100986 |
T |
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| Q |
223 |
aatccaaatcaatctctaccataaatcttgcaaattatggactaaaaggtaaactccacactctc |
287 |
Q |
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||||||| || ||||||||| |||||||||||| ||||||||||||| ||| ||| ||||| |
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| T |
31100987 |
aatccaatctcatttctaccatagatcttgcaaatttaggactaaaaggtacacttcactctctc |
31101051 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 123 - 287
Target Start/End: Original strand, 31056446 - 31056616
Alignment:
| Q |
123 |
ttgaaatggaaagatagctttgacaaccacagccaagctctgctgtcaacttggataagaactactagtccatg------caactggaaaggagttcagt |
216 |
Q |
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|||||||||||||||||||||||| |||| || ||| |||| |||||||||||| || | || | |||||| ||| |||| |||| || ||| |
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| T |
31056446 |
ttgaaatggaaagatagctttgacgaccaaagtcaaactctcttgtcaacttggaaaaataacacaaatccatgcaaacccaaatggagaggaattaagt |
31056545 |
T |
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| Q |
217 |
gtgacaaatccaaatcaatctctaccataaatcttgcaaattatggactaaaaggtaaactccacactctc |
287 |
Q |
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||||||||||||| | || ||||||||| ||||||||||| ||| ||||||||| ||| ||| ||||| |
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| T |
31056546 |
gtgacaaatccaatttcatttctaccataggtcttgcaaatttaggattaaaaggtacacttcactctctc |
31056616 |
T |
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