View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16969_high_13 (Length: 206)
Name: NF16969_high_13
Description: NF16969
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16969_high_13 |
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Alignment Details
Target: chr8 (Bit Score: 170; Significance: 2e-91; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 20 - 193
Target Start/End: Original strand, 6233770 - 6233943
Alignment:
| Q |
20 |
agttgggagatcatagtttacgaccagagacgctttatgcaaatctgtaccacaaacgagggggtcggtggtaatgagaacttgaggagagccagactcg |
119 |
Q |
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| T |
6233770 |
agttgggagatcatagtttacgaccagagacgctttatgcaaatctgtaccacaaacgagggggtcggtggtaatgagaacttgaggagagccagactcg |
6233869 |
T |
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| Q |
120 |
aaaagaaactcaccttcaatggtatccatagtgttctggtccctgtcaccatgaatgacataatgatctctgct |
193 |
Q |
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| T |
6233870 |
aaaagaaactcacgttcaatggtatccatagtgttctggtccctgtcaccatgaatgacataatgatctctgct |
6233943 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 20 - 130
Target Start/End: Original strand, 6226512 - 6226622
Alignment:
| Q |
20 |
agttgggagatcatagtttacgaccagagacgctttatgcaaatctgtaccacaaacgagggggtcggtggtaatgagaacttgaggagagccagactcg |
119 |
Q |
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||||||||||||||||||||||| ||||||||||||||||| ||||| |||||||| ||||||||||||||||||||||||||||||||| ||||| | |
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| T |
6226512 |
agttgggagatcatagtttacgatcagagacgctttatgcacatctgcaccacaaagctgggggtcggtggtaatgagaacttgaggagagctagactgg |
6226611 |
T |
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| Q |
120 |
aaaagaaactc |
130 |
Q |
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||| |||||| |
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| T |
6226612 |
gaaaaaaactc |
6226622 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 20 - 122
Target Start/End: Original strand, 6240868 - 6240970
Alignment:
| Q |
20 |
agttgggagatcatagtttacgaccagagacgctttatgcaaatctgtaccacaaacgagggggtcggtggtaatgagaacttgaggagagccagactcg |
119 |
Q |
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|||||||||||||||||||| |||||||||| ||| |||| |||| ||| | || | |||||||||||||||||||| |||||||| ||||||| | |
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| T |
6240868 |
agttgggagatcatagtttatgaccagagacacttcctgcacatctaaaccgtagaccaaggggtcggtggtaatgagaatctgaggagaaccagactgg |
6240967 |
T |
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| Q |
120 |
aaa |
122 |
Q |
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||| |
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| T |
6240968 |
aaa |
6240970 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 70; Significance: 9e-32; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 70; E-Value: 9e-32
Query Start/End: Original strand, 23 - 168
Target Start/End: Complemental strand, 17545601 - 17545456
Alignment:
| Q |
23 |
tgggagatcatagtttacgaccagagacgctttatgcaaatctgtaccacaaacgagggggtcggtggtaatgagaacttgaggagagccagactcgaaa |
122 |
Q |
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|||||||||||||||||||| |||||| ||||||||| ||||||||||||||| | |||||| |||||||||||||| |||||||||||||||| | || |
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| T |
17545601 |
tgggagatcatagtttacgatcagagatactttatgcacatctgtaccacaaaccaaggggtctgtggtaatgagaacatgaggagagccagactgggaa |
17545502 |
T |
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| Q |
123 |
agaaactcaccttcaatggtatccatagtgttctggtccctgtcac |
168 |
Q |
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| T |
17545501 |
aagaactcgcgcacaatgatatccctagtgttctggtccatgtcac |
17545456 |
T |
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