View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16969_low_1 (Length: 711)
Name: NF16969_low_1
Description: NF16969
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16969_low_1 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 468; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 468; E-Value: 0
Query Start/End: Original strand, 14 - 696
Target Start/End: Original strand, 36373507 - 36374171
Alignment:
| Q |
14 |
atcatgtgatgaagaaggtggttataatgtttcttcgggacatgttaataatttctgcacaaagaagcttaagagaaggcggttgtgtaaggagcatatg |
113 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||| |
|
|
| T |
36373507 |
atcatgtgatgaagaaggtggttataatgtttcttcgggacatgttaataatttctgcacaaagaagtttaagagaaggcggttgtgtaaggagcttatg |
36373606 |
T |
|
| Q |
114 |
cgtttaataactttatgggaagctatacaatccaaagaaggtgttcaaaggaaaacgacaaacagtatcgatgatcatgaagaacaggatcataaagacg |
213 |
Q |
| |
|
||| ||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
36373607 |
gatttgataactttatgggaagcgatacaatccaaagaaggtgttcaaaagaaaacgacaaacagtatcgatgatcatgaagaacaggatcataaaggcg |
36373706 |
T |
|
| Q |
214 |
gtagaacgttaaatgctgatgcctgtgaggaattaatcgatgcttacatggataattttgatagcctaccaactgaagaagatccaactatcagtgaaga |
313 |
Q |
| |
|
|||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36373707 |
gtagaatgttaaatgctgatgcctgtgaggaagtaatcgatgcttacatggataattttgatagcctaccaactgaagaagatccaactatcagtgaaga |
36373806 |
T |
|
| Q |
314 |
aagacagtttgagcaggagaaagaaaacgtattggaaagcggtgatgaggtagaaaatcctgatgatttggctaacatatgggaagaaatggaaacagct |
413 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||| |
|
|
| T |
36373807 |
aagacagtttgagcaggagaaagaaaacgtatcggaaaaaggtgatgaggtagaaaatcctgatgatttggccgacatgtgggaagaaatggaaacagct |
36373906 |
T |
|
| Q |
414 |
ttgacatcaagttatcttcttgatggaagtgaggtgtgtgactgtgaaatttgctttccccgtctcttgtcttttgttatgtgatatcatatgtttttta |
513 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||| |||||||||||||| |||||||||||||||||||||| |
|
|
| T |
36373907 |
ttgacatcaagttatcttcttgatggaaatgaggtgtgtgac--tgaaatttgctttc--------------------atgtgatatcatatgtttttta |
36373984 |
T |
|
| Q |
514 |
gtttagttttgatatcctatctgtataaaatgttttacactgtcaacaaaatca-----tagtttgattgactgttgaaccatttatggttgaagtcaaa |
608 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| | | |||||||| ||||||||||||||||||||||||||| |
|
|
| T |
36373985 |
gtttagttttgatatcctatctgtataaaatgttttacactgtcaacaaaatcagtcagtcatatgattgacagttgaaccatttatggttgaagtcaaa |
36374084 |
T |
|
| Q |
609 |
tatgtttaatgatatgacaattataatatataggtggtgtaaagaagttttacactcacaatatatatgatttaaatacgttgttttt |
696 |
Q |
| |
|
||||||||||||||||||| |||| || |||||| ||||| ||||||||||||||||| ||||||||||| ||||||| |||||||| |
|
|
| T |
36374085 |
tatgtttaatgatatgacagttatgatttataggcagtgtacagaagttttacactcac-atatatatgatataaatactttgttttt |
36374171 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 62; Significance: 2e-26; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 334 - 455
Target Start/End: Complemental strand, 32251652 - 32251531
Alignment:
| Q |
334 |
aagaaaacgtattggaaagcggtgatgaggtagaaaatcctgatgatttggctaacatatgggaagaaatggaaacagctttgacatcaagttatcttct |
433 |
Q |
| |
|
||||||| |||| | |||||| |||||||| ||||||| |||||||||||| | | | |||||||||||| | |||||||||||||||||||||||||| |
|
|
| T |
32251652 |
aagaaaaagtatcgaaaagcgatgatgaggaagaaaatgctgatgatttggatgccttgtgggaagaaatgaatacagctttgacatcaagttatcttct |
32251553 |
T |
|
| Q |
434 |
tgatggaagtgaggtgtgtgac |
455 |
Q |
| |
|
|||||||| || |||||||||| |
|
|
| T |
32251552 |
tgatggaactgcggtgtgtgac |
32251531 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 188 - 295
Target Start/End: Complemental strand, 32251813 - 32251706
Alignment:
| Q |
188 |
tcatgaagaacaggatcataaagacggtagaacgttaaatgctgatgcctgtgaggaattaatcgatgcttacatggataattttgatagcctaccaact |
287 |
Q |
| |
|
|||||||||||| |||||||||| ||||||||| || |||||||||||| | ||||| |||| ||| ||||||| | ||||| ||||| ||||||||| |
|
|
| T |
32251813 |
tcatgaagaacaagatcataaaggcggtagaacattcaatgctgatgcccgcaaggaaataatagatagttacatgaagaatttcgatagtctaccaact |
32251714 |
T |
|
| Q |
288 |
gaagaaga |
295 |
Q |
| |
|
|||||||| |
|
|
| T |
32251713 |
gaagaaga |
32251706 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 393 - 455
Target Start/End: Complemental strand, 32229101 - 32229039
Alignment:
| Q |
393 |
tgggaagaaatggaaacagctttgacatcaagttatcttcttgatggaagtgaggtgtgtgac |
455 |
Q |
| |
|
|||||| ||||||| ||| ||| |||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
32229101 |
tgggaataaatggatacaacttcgacatcaagttatcttcttgatggaactgaggtgtgtgac |
32229039 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 349 - 455
Target Start/End: Complemental strand, 8846017 - 8845911
Alignment:
| Q |
349 |
aaagcggtgatgaggtagaaaatcctgatgatttggctaacatatgggaagaaatggaaacagctttgacatcaagttatcttcttgatggaagtgaggt |
448 |
Q |
| |
|
|||||| ||||| || ||||||||||||||| ||| || ||| |||||||||||||| || ||| || || |||||| |||||||||||||| |||||| |
|
|
| T |
8846017 |
aaagcgatgatggggaagaaaatcctgatgacttgtctgccatttgggaagaaatggatactgctatggcagcaagttgtcttcttgatggaactgaggt |
8845918 |
T |
|
| Q |
449 |
gtgtgac |
455 |
Q |
| |
|
|||||| |
|
|
| T |
8845917 |
ttgtgac |
8845911 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 583 - 696
Target Start/End: Complemental strand, 12070085 - 12069974
Alignment:
| Q |
583 |
ttgaaccatttatggttgaagtcaaatatgtttaatgatatgacaattataatatataggtggtgtaaagaagttttacactcacaatatatatgattta |
682 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||| ||| |||||||||| || |||| |||| | | ||||| | ||||||||||||||| ||| |
|
|
| T |
12070085 |
ttgaaccatttatggttcaagtcaaatatgtttaaggatgtgacaattatgattgatagacagtgtgcaaatgtttt--agtcacaatatatatgaatta |
12069988 |
T |
|
| Q |
683 |
aatacgttgttttt |
696 |
Q |
| |
|
||||| |||||||| |
|
|
| T |
12069987 |
aatactttgttttt |
12069974 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University