View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16969_low_10 (Length: 260)
Name: NF16969_low_10
Description: NF16969
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16969_low_10 |
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Alignment Details
Target: chr8 (Bit Score: 209; Significance: 1e-114; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 19 - 247
Target Start/End: Original strand, 6233715 - 6233943
Alignment:
| Q |
19 |
agtttatagcaaattttccactccggcctatacggtaaagatagtttttaggcacagttgggagatcatagtttacgaccagagacgctttatgcaaatc |
118 |
Q |
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| T |
6233715 |
agtttatagcaaatttcccactccggcctatatggttaagatagttttcaggcacagttgggagatcatagtttacgaccagagacgctttatgcaaatc |
6233814 |
T |
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| Q |
119 |
tgtaccacaaacgagggggtcggtggtaatgagaacttgaggagagccagactcgaaaagaaactcaccttcaatggtatccatagtgttctggtccctg |
218 |
Q |
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| T |
6233815 |
tgtaccacaaacgagggggtcggtggtaatgagaacttgaggagagccagactcgaaaagaaactcacgttcaatggtatccatagtgttctggtccctg |
6233914 |
T |
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| Q |
219 |
tcaccatgaatgacataatgatctctgct |
247 |
Q |
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| T |
6233915 |
tcaccatgaatgacataatgatctctgct |
6233943 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 19 - 184
Target Start/End: Original strand, 6226457 - 6226622
Alignment:
| Q |
19 |
agtttatagcaaattttccactccggcctatacggtaaagatagtttttaggcacagttgggagatcatagtttacgaccagagacgctttatgcaaatc |
118 |
Q |
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|||||||||||||||| |||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| ||| |
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| T |
6226457 |
agtttatagcaaatttctcactccggcctatacggtgaagatagttttcaggcacagttgggagatcatagtttacgatcagagacgctttatgcacatc |
6226556 |
T |
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| Q |
119 |
tgtaccacaaacgagggggtcggtggtaatgagaacttgaggagagccagactcgaaaagaaactc |
184 |
Q |
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| T |
6226557 |
tgcaccacaaagctgggggtcggtggtaatgagaacttgaggagagctagactgggaaaaaaactc |
6226622 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 47 - 176
Target Start/End: Original strand, 6240841 - 6240970
Alignment:
| Q |
47 |
tatacggtaaagatagtttttaggcacagttgggagatcatagtttacgaccagagacgctttatgcaaatctgtaccacaaacgagggggtcggtggta |
146 |
Q |
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| T |
6240841 |
tatacggtggagatagttttcaggtagagttgggagatcatagtttatgaccagagacacttcctgcacatctaaaccgtagaccaaggggtcggtggta |
6240940 |
T |
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| Q |
147 |
atgagaacttgaggagagccagactcgaaa |
176 |
Q |
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| T |
6240941 |
atgagaatctgaggagaaccagactggaaa |
6240970 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 89; Significance: 5e-43; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 42 - 222
Target Start/End: Complemental strand, 17545636 - 17545456
Alignment:
| Q |
42 |
cggcctatacggtaaagatagtttttaggcacagttgggagatcatagtttacgaccagagacgctttatgcaaatctgtaccacaaacgagggggtcgg |
141 |
Q |
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||||||||||| ||||||||||||| |||| ||| |||||||||||||||||||| |||||| ||||||||| ||||||||||||||| | |||||| | |
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| T |
17545636 |
cggcctatacgataaagatagttttcaggcgcagctgggagatcatagtttacgatcagagatactttatgcacatctgtaccacaaaccaaggggtctg |
17545537 |
T |
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| Q |
142 |
tggtaatgagaacttgaggagagccagactcgaaaagaaactcaccttcaatggtatccatagtgttctggtccctgtcac |
222 |
Q |
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| T |
17545536 |
tggtaatgagaacatgaggagagccagactgggaaaagaactcgcgcacaatgatatccctagtgttctggtccatgtcac |
17545456 |
T |
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