View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16969_low_13 (Length: 235)
Name: NF16969_low_13
Description: NF16969
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16969_low_13 |
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Alignment Details
Target: chr8 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 16 - 221
Target Start/End: Original strand, 33607480 - 33607685
Alignment:
| Q |
16 |
cagcaatcttagaagcttcaacaaacttgtgagtcaactccttgaaatcagactgaagtgaacaagtaaccttagctccatagtgttccaaaccaaaagc |
115 |
Q |
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| T |
33607480 |
cagcaatcttagaagcttcaacaaacttgtgagtcaactccttgaaatcagactgaagtgaacaagtaaccttagctccatagtgttccaaaccaaaagc |
33607579 |
T |
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| Q |
116 |
cttagaaacagattgagtagacttaagctgcaaactgttgctacgtaacttggttggttgcatgagagtagcagctgcttggagtgaggctgccattgct |
215 |
Q |
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| T |
33607580 |
cttagaaacagattgagtagacttaagctgcaaactgttgctacgtaacttggttggttgcatgagagtagcagctgcttggagtgaggctgccattgct |
33607679 |
T |
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| Q |
216 |
cctatg |
221 |
Q |
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|||||| |
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| T |
33607680 |
cctatg |
33607685 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 68 - 160
Target Start/End: Complemental strand, 6961686 - 6961594
Alignment:
| Q |
68 |
ctgaagtgaacaagtaaccttagctccatagtgttccaaaccaaaagccttagaaacagattgagtagacttaagctgcaaactgttgctacg |
160 |
Q |
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| T |
6961686 |
ctgaagagaacaagtgagcttagctccattgtgttccaagccaaaagccttagaaatggattgtgttgacttgagatgtaaagtggtgctacg |
6961594 |
T |
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