View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16969_low_15 (Length: 213)
Name: NF16969_low_15
Description: NF16969
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16969_low_15 |
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Alignment Details
Target: chr5 (Bit Score: 155; Significance: 2e-82; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 17 - 179
Target Start/End: Complemental strand, 13882261 - 13882099
Alignment:
| Q |
17 |
aacctgtggaagaagtttgtggtgaagccagaggagaaaactacatggatgctgatgatgaaggggaagaaagtcctcagaggtcattggaggacagcga |
116 |
Q |
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| T |
13882261 |
aacctggggaagaagtttgtggtgaagccagaggagaaaactacatggatgctgatgatgaaggggaagaaagtcctcagaggtcattggaggacagcga |
13882162 |
T |
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| Q |
117 |
aaatacttctgaaaatgctgatgtttctggaagcaaatctattgatggtgcgaggatgcagaa |
179 |
Q |
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| T |
13882161 |
aaatacttctgcaaatgctgatgtttctggaagcaaatctattgatggtgcgaggatgcagaa |
13882099 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 25 - 149
Target Start/End: Complemental strand, 16024735 - 16024611
Alignment:
| Q |
25 |
gaagaagtttgtggtgaagccagaggagaaaactacatggatgctgatgatgaaggggaagaaagtcctcagaggtcattggaggacagcgaaaatactt |
124 |
Q |
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| T |
16024735 |
gaagaagtttgtggtgaagccagaggagaaaattatgcagatgctgatgatgaaggggaagaaagtcctcagaggtcatcagagggcagtgaaaacgctt |
16024636 |
T |
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| Q |
125 |
ctgaaaatgctgatgtttctggaag |
149 |
Q |
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| T |
16024635 |
ctggaaacgttgatgtttctggaag |
16024611 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 24 - 166
Target Start/End: Original strand, 14397456 - 14397598
Alignment:
| Q |
24 |
ggaagaagtttgtggtgaagccagaggagaaaactacatggatgctgatgatgaaggggaagaaagtcctcagaggtcattggaggacagcgaaaatact |
123 |
Q |
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| T |
14397456 |
ggaagaagtttgtggtgaaggaggagaagaaaattatatggatcttaatgatgaaggggaagaaagtcctcataggtcatcggaggacaatgaaaatggt |
14397555 |
T |
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| Q |
124 |
tctgaaaatgctgatgtttctggaagcaaatctattgatggtg |
166 |
Q |
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| T |
14397556 |
tctgaaaatgttgttgtttcaggaagtgaatctactaatggtg |
14397598 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 76 - 163
Target Start/End: Complemental strand, 13884011 - 13883924
Alignment:
| Q |
76 |
gaaggggaagaaagtcctcagaggtcattggaggacagcgaaaatacttctgaaaatgctgatgtttctggaagcaaatctattgatg |
163 |
Q |
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| T |
13884011 |
gaaggggaagagagtcctcagaggtcatcggaggatagttaaaatgcttctgaaaatgttgatgtttctggaagcgaatctgttgatg |
13883924 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 24 - 166
Target Start/End: Original strand, 14391173 - 14391312
Alignment:
| Q |
24 |
ggaagaagtttgtggtgaagccagaggagaaaactacatggatgctgatgatgaagggga-agaaagtcctcagaggtcattggaggacagcgaaaatac |
122 |
Q |
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| T |
14391173 |
ggaagaaatttgtggtaaagccagagaagaaaattatatggaa----atgatgaagggggtagaaagtcctcataggtcatccgaggacaatgaaaaagg |
14391268 |
T |
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| Q |
123 |
ttctgaaaatgctgatgtttctggaagcaaatctattgatggtg |
166 |
Q |
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| T |
14391269 |
ttctaaaaatgtttatgtttctggaatcgaatctaatgatggtg |
14391312 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 67 - 99
Target Start/End: Original strand, 14393011 - 14393043
Alignment:
| Q |
67 |
gctgatgatgaaggggaagaaagtcctcagagg |
99 |
Q |
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| T |
14393011 |
gctgatgatgaaggggaagaaagtcctcggagg |
14393043 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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