View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16969_low_16 (Length: 210)
Name: NF16969_low_16
Description: NF16969
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16969_low_16 |
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| [»] chr4 (6 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 202; Significance: 1e-110; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 210
Target Start/End: Complemental strand, 45318752 - 45318543
Alignment:
| Q |
1 |
catcttcagcctcaattttctcagtctctacctggtgaacaataattttctcagactccacctggttaagagtaggcgttgctttcttatcatcatcttc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45318752 |
catcttcagcctcaattttctcagtctctacctggtgaacaataattttctcagactccacctggttaagagtaggcgttgctttcttatcatcatcttc |
45318653 |
T |
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| Q |
101 |
ttcggcctcaattttctcaggctctatctggttaccagtaattttctcagactccaccaggttaacagtaggatttgctttcttaccatcgtcgtcgtca |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
45318652 |
ttcggcctcaattttctcaggctctatctggttaccagtaattttttcagactccaccaggttaactgtaggatttgctttcttaccatcgtcgtcgtca |
45318553 |
T |
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| Q |
201 |
tcatcatcat |
210 |
Q |
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|||||||||| |
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| T |
45318552 |
tcatcatcat |
45318543 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 44 - 190
Target Start/End: Complemental strand, 45318805 - 45318659
Alignment:
| Q |
44 |
aattttctcagactccacctggttaagagtaggcgttgctttcttatcatcatcttcttcggcctcaattttctcaggctctatctggttaccagtaatt |
143 |
Q |
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||||||||||| ||||||||||||| |||||| ||| ||||||||||||||| ||||| |||||||||||||||| ||||| ||||| | || ||||| |
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| T |
45318805 |
aattttctcaggctccacctggttatcagtaggatttgttttcttatcatcatcatcttcagcctcaattttctcagtctctacctggtgaacaataatt |
45318706 |
T |
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| Q |
144 |
ttctcagactccaccaggttaacagtaggatttgctttcttaccatc |
190 |
Q |
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| T |
45318705 |
ttctcagactccacctggttaagagtaggcgttgctttcttatcatc |
45318659 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 89 - 184
Target Start/End: Complemental strand, 45318550 - 45318455
Alignment:
| Q |
89 |
atcatcatcttcttcggcctcaattttctcaggctctatctggttaccagtaattttctcagactccaccaggttaacagtaggatttgctttctt |
184 |
Q |
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||||||||| ||||| |||||||||||||||||||||| ||||||| ||||||||||||| ||||||||| ||||||| ||||||||||||||||| |
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| T |
45318550 |
atcatcatcatcttcagcctcaattttctcaggctctacctggttaacagtaattttctccgactccacctggttaactgtaggatttgctttctt |
45318455 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 1 - 124
Target Start/End: Complemental strand, 45318542 - 45318422
Alignment:
| Q |
1 |
catcttcagcctcaattttctcagtctctacctggtgaacaataattttctcagactccacctggttaagagtaggcgttgctttcttatcatcatcttc |
100 |
Q |
| |
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|||||||||||||||||||||||| ||||||||||| |||| |||||||||| |||||||||||||||| ||||| |||||||||| |||||| | |
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| T |
45318542 |
catcttcagcctcaattttctcaggctctacctggttaacagtaattttctccgactccacctggttaactgtaggatttgctttcttctcatca---tt |
45318446 |
T |
|
| Q |
101 |
ttcggcctcaattttctcaggctc |
124 |
Q |
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||| |||||||||||||||||||| |
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| T |
45318445 |
ttcagcctcaattttctcaggctc |
45318422 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 5 - 120
Target Start/End: Complemental strand, 45318445 - 45318327
Alignment:
| Q |
5 |
ttcagcctcaattttctcag------tctctacctggtgaacaataattttctcagactccacctggttaagagtaggcgttgctttcttatcatcatct |
98 |
Q |
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|||||||||||||||||||| ||||| |||||| ||| |||||||| ||| ||||||||||||| | |||||| || |||||||||||||| |
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| T |
45318445 |
ttcagcctcaattttctcaggctccgtctctgcctggttaacgataattttttcatactccacctggtttatagtaggattttttttcttatcatcat-- |
45318348 |
T |
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| Q |
99 |
tcttcggcctcaattttctcag |
120 |
Q |
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|||| |||||||||||||||| |
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| T |
45318347 |
-cttcagcctcaattttctcag |
45318327 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 45318350 - 45318303
Alignment:
| Q |
1 |
catcttcagcctcaattttctcagtctctacctggtgaacaataattt |
48 |
Q |
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|||||||||||||||||||||||| ||| ||||||| ||||||||||| |
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| T |
45318350 |
catcttcagcctcaattttctcagactccacctggtaaacaataattt |
45318303 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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