View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16969_low_5 (Length: 373)
Name: NF16969_low_5
Description: NF16969
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16969_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 343; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 3 - 357
Target Start/End: Complemental strand, 25175965 - 25175611
Alignment:
| Q |
3 |
catagggtgattgtgaactcaataaaagatcgtgtttccttggccatgttttacaatccaaagagtgatttgctaattgaacctgctaaggagcttgtga |
102 |
Q |
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| T |
25175965 |
catagggtgattgtgaactcaataaaagatcgtgtttctttggccatgttttacaatccaaagagtgatttgctaattgaacctgctaaggagcttgtga |
25175866 |
T |
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| Q |
103 |
caaaggaaaggccagctttgtactcagcaatgacctatgatgaatacagactttttattaggatgaaaggaccttgtggaaagactcaagttgaatcatt |
202 |
Q |
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| T |
25175865 |
caaaggaaaggccagctttgtactcagcaatgacctatgatgaatacagactttttattaggatgaaaggaccttgtggaaagactcaagttgaatcatt |
25175766 |
T |
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| Q |
203 |
ggcttcacaagtgtaattagttccaatagtaattaatcatgtaatttgcaaatgacataattagcatataattaaataattggatatgttgctcttgggt |
302 |
Q |
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| T |
25175765 |
ggcttcacaagtgtaattagttccaataataattaatcatgtaatttgcaaatgacatgattagcatataattaaataattggatatgttgctcttgggt |
25175666 |
T |
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| Q |
303 |
tgggtaggtttaacttattatcatgtctttagtttggggttcaattgatgaaaaa |
357 |
Q |
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| T |
25175665 |
tgggtaggtttaacttattatcatgtctttagtttggggttcaattgatgaaaaa |
25175611 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 12 - 204
Target Start/End: Original strand, 4781926 - 4782118
Alignment:
| Q |
12 |
attgtgaactcaataaaagatcgtgtttccttggccatgttttacaatccaaagagtgatttgctaattgaacctgctaaggagcttgtgacaaaggaaa |
111 |
Q |
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| T |
4781926 |
attgtgaactccaacaaagatagagtttcattggccttcttttataatccaagaagtgatttactaattcaacctgctaaggaacttatcactaaggata |
4782025 |
T |
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| Q |
112 |
ggccagctttgtactcagcaatgacctatgatgaatacagactttttattaggatgaaaggaccttgtggaaagactcaagttgaatcattgg |
204 |
Q |
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| T |
4782026 |
ggccagcactctacccaccaatgacatttgatgaatatagactttacattaggacaaaagggccttgtggaaaagctcaagtagaatctttgg |
4782118 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 127 - 199
Target Start/End: Complemental strand, 31789819 - 31789747
Alignment:
| Q |
127 |
cagcaatgacctatgatgaatacagactttttattaggatgaaaggaccttgtggaaagactcaagttgaatc |
199 |
Q |
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| T |
31789819 |
cagcaatgacctttgatgagtacagactcttcattagaatgaggggaccttgtggcaaatctcaagttgaatc |
31789747 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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