View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16969_low_6 (Length: 324)
Name: NF16969_low_6
Description: NF16969
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16969_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 301; Significance: 1e-169; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 1 - 305
Target Start/End: Complemental strand, 50240702 - 50240398
Alignment:
| Q |
1 |
tgagactcaaatttggcatcaaacatcatcctatacatgatattatacagcatcaactgaagacgttttctgataacaatgccttcacttttaacaatct |
100 |
Q |
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| T |
50240702 |
tgagactcaaatttggcatcaaacatcatcctatacatgatattatacagcatcaactgaagacgttttctgataacaatgccttcacttttaacaatct |
50240603 |
T |
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| Q |
101 |
cattagcctttaggtcttgaattaccaaatccatctcttgttcccacatgttactataattttgaacaactttgttagtgaaaaatggcaatgtcatgat |
200 |
Q |
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| T |
50240602 |
cattagcctttaggtcttgaactaccaaatccatctcttgttcccacatgttactataattttgaacaactttgttagtgaaaaatggcaatgtcatgat |
50240503 |
T |
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| Q |
201 |
tcttcgcattttgcgccaatgatcaccatagacagtgaaaaccatgtcttgtccattaccagtgaagatgtcaaagacaacgttacgaggacgagaacca |
300 |
Q |
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| T |
50240502 |
tcttcgcattttgcgccaatgatcaccatagacagtgaaaaccatgtcttgtccattaccagtgaagatgtcaaagacaacgttacgaggacgagaacca |
50240403 |
T |
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| Q |
301 |
aactc |
305 |
Q |
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||||| |
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| T |
50240402 |
aactc |
50240398 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 54; Significance: 5e-22; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 162 - 287
Target Start/End: Original strand, 32083785 - 32083910
Alignment:
| Q |
162 |
ttgaacaactttgttagtgaaaaatggcaatgtcatgattcttcgcattttgcgccaatgatcaccatagacagtgaaaaccatgtcttgtccattacca |
261 |
Q |
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| T |
32083785 |
ttgaacaaccttgtttgtaaaaaacggaactgtcatgattctgcgcattttacgccaatgttcgccgtagactgtgaacaccatgtcttgtcctttacca |
32083884 |
T |
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| Q |
262 |
gtgaagatgtcaaagacaacgttacg |
287 |
Q |
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| T |
32083885 |
gtgaagatatcgaaaactacgttacg |
32083910 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 59
Target Start/End: Original strand, 32083641 - 32083682
Alignment:
| Q |
18 |
atcaaacatcatcctatacatgatattatacagcatcaactg |
59 |
Q |
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| T |
32083641 |
atcaaacataatcctatacataatattatacatcatcaactg |
32083682 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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