View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16969_low_8 (Length: 288)
Name: NF16969_low_8
Description: NF16969
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16969_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 243; Significance: 1e-135; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 18 - 280
Target Start/End: Complemental strand, 16613466 - 16613204
Alignment:
| Q |
18 |
aaaggtgcccataacttccatcttgtcaagtgtcccaaaactccacttacaattattgatacattaagaaagaaggttaaacttgactagttagattcgt |
117 |
Q |
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| T |
16613466 |
aaaggtgcccataacttccatcttgtctagtgtcccaaaactccacttacaattattgatacattaagaaagaaggttaaacttgactagatagattcgt |
16613367 |
T |
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| Q |
118 |
gtgaatgacaaaatcttgcaaaagaggtcattgaggatgaatgaggtacgtttagagatatatcaatatgattatagatatgttaattgatagtgctgga |
217 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||| |
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| T |
16613366 |
gtgaatgacaaaatcttgcaaaagaggtccttgaggatgaatgaggtacgtttagagatatatcaatatgatgatagatatgttaatcgatagtgctgga |
16613267 |
T |
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| Q |
218 |
cagggcccatactttgatgttcatattaaatatacgaaatatgagttgtaaaaggtgatgatg |
280 |
Q |
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| T |
16613266 |
cagggcccatactttgatgttcatattaaatatacgaaatatgagttgtaaaaggtgatgatg |
16613204 |
T |
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