View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1696_high_1 (Length: 567)

Name: NF1696_high_1
Description: NF1696
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1696_high_1
NF1696_high_1
[»] chr5 (22 HSPs)
chr5 (126-424)||(10218120-10218419)
chr5 (399-546)||(11049560-11049722)
chr5 (15-127)||(10217661-10217773)
chr5 (463-551)||(10218450-10218538)
chr5 (163-440)||(10603276-10603551)
chr5 (152-303)||(10664558-10664710)
chr5 (160-440)||(10599611-10599889)
chr5 (464-551)||(10610107-10610194)
chr5 (137-289)||(10661470-10661623)
chr5 (241-313)||(10764622-10764694)
chr5 (137-208)||(10653584-10653655)
chr5 (160-446)||(10610227-10610511)
chr5 (465-551)||(10563424-10563510)
chr5 (160-311)||(10748423-10748575)
chr5 (152-290)||(7191675-7191814)
chr5 (161-291)||(10557589-10557720)
chr5 (20-122)||(10747935-10748037)
chr5 (166-286)||(10549467-10549588)
chr5 (22-79)||(9837250-9837307)
chr5 (399-448)||(10579522-10579571)
chr5 (399-448)||(10590072-10590121)
chr5 (522-551)||(10718681-10718710)
[»] chr6 (6 HSPs)
chr6 (150-208)||(12956834-12956892)
chr6 (152-310)||(12905840-12905999)
chr6 (153-291)||(12930948-12931087)
chr6 (153-188)||(12947417-12947452)
chr6 (465-551)||(12947038-12947124)
chr6 (20-125)||(12947828-12947933)
[»] chr2 (2 HSPs)
chr2 (241-310)||(17924893-17924962)
chr2 (152-208)||(17924803-17924859)
[»] chr3 (1 HSPs)
chr3 (399-448)||(31468804-31468853)


Alignment Details
Target: chr5 (Bit Score: 276; Significance: 1e-154; HSPs: 22)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 126 - 424
Target Start/End: Original strand, 10218120 - 10218419
Alignment:
Q  126 ctgattatactcaacatatagctcaataagttcagtggataaattgcctatgaaatttggcaagttgcctccaaaattgttattgtttatagaaagcact 225  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10218120 ctgattatacccaacatatagctcaataagttcagtggataaattgcctatgaaatttggcaagttgcctccaaaattgttattgtttatagaaagcact 10218219  T
Q  226 tgcaacttagtataatt-gtcaaagattttaaaaactccaaatcctttgttgaattgtcacctaaatagttgtattccaaatttagcaatagtagatctt 324  Q
    |||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |    
T  10218220 tgcaacttagtacaatttgtcaaagattttaaaaactccaaatcctttgttgaattgtcacctaaatagttgtattccaaacttagcaatagtagatcat 10218319  T
Q  325 ttagccatcctagagttggaacttgtccaacaaaatagttttgaccgagatcaaatattgtaatgggagatgatgcatttgttatggaagtggggattgg 424  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10218320 ttagccatcctagagttggaacttgtccaacaaaatagttttgaccgagatcaaatattgtaatgggagatgatgcatttgttatggaagtggggattgg 10218419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 399 - 546
Target Start/End: Original strand, 11049560 - 11049722
Alignment:
Q  399 gcatttgttatggaagtggggattggacctgagaattgatttcccccaatcgcacaaaattggaga---------------aacatgttgggtggaagag 483  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||               |||||||||||||||||||    
T  11049560 gcatttgttatggaagtggggattggtcctgagaattgatttcccccaatcgcacaaaattggagattggggaaggcatgaaacatgttgggtggaagag 11049659  T
Q  484 agccataaaagttattcattgttagtgtgagctcaataagtgatgagatattgtaaaaacaag 546  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11049660 agccataaaagttattcattgttagtgtgagctcaataagtgatgagatattgtaaaaacaag 11049722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 15 - 127
Target Start/End: Original strand, 10217661 - 10217773
Alignment:
Q  15 aatgataggaatatcaccaaacagattattttcagaaacatctagcttaccaatattttttagcatgccaagttctcttggcaagctactgctcaaaaag 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||     
T  10217661 aatgataggaatatcaccaaacagattattttcagaaacatctagcttaccaatattttttagcatgccaacttctcttggcaagctaccgctcaaaaaa 10217760  T
Q  115 ttctgtgacaact 127  Q
    || ||||||||||    
T  10217761 ttatgtgacaact 10217773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 463 - 551
Target Start/End: Original strand, 10218450 - 10218538
Alignment:
Q  463 gaaacatgttgggtggaagagagccataaaagttattcattgttagtgtgagctcaataagtgatgagatattgtaaaaacaagaagga 551  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10218450 gaaacatgttgggtggaagagagccataaaagttattcattgttagtgtgagctcaataagtgatgagatattgtaaaaacaagaagga 10218538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 163 - 440
Target Start/End: Complemental strand, 10603551 - 10603276
Alignment:
Q  163 gataaattgcctatgaaatttggcaagttgcctccaaaattgttattgtttatagaaagcacttgcaacttagtataatt-gtcaaagattttaaaaact 261  Q
    |||||||| |||||  ||||| ||||  | ||||||||||| |||||| ||| ||| ||   |||||||||| || | || ||||| |||||||||||||    
T  10603551 gataaatttcctatagaattttgcaaactacctccaaaattattattggttaaagatagtgattgcaacttactacagtttgtcaatgattttaaaaact 10603452  T
Q  262 ccaaatcctttgttgaattgtcacctaaatagttgtattccaaatttagcaatagtagatcttttagccatcctagagttggaacttgtccaacaaaata 361  Q
    |||||||  ||||||| ||||||||||||  |||   |||||||||||||||    ||||||||||||   |||||| |||||||||||||||||||||     
T  10603451 ccaaatcaattgttgagttgtcacctaaaatgttcatttccaaatttagcaaataaagatcttttagcttccctagacttggaacttgtccaacaaaatg 10603352  T
Q  362 gttttgaccgagatcaaatattgtaatgggagatgatgcatttgttatggaagtggggattggacctgagaattgattt 440  Q
    ||| | ||| |  ||||||| ||| |    ||| || ||||| |  || |||||||||||||||||| |||||||||||    
T  10603351 gttgtcaccaatttcaaataatgtca---aagaagaagcattcgaaattgaagtggggattggacctaagaattgattt 10603276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 152 - 303
Target Start/End: Original strand, 10664558 - 10664710
Alignment:
Q  152 taagttcagtggataaattgcctatgaaatttggcaagttgcctccaaaattgttattgtttatagaaagcacttgcaacttagtataatt-gtcaaaga 250  Q
    |||||| | ||||||||||||||| |||||||| ||| ||| |||||||||| ||||||  |||||||| |||||| |   || || |||| ||||| ||    
T  10664558 taagttgattggataaattgcctacgaaatttgtcaatttggctccaaaattattattgcatatagaaatcacttgtagtctactacaattcgtcaagga 10664657  T
Q  251 ttttaaaaactccaaatcctttgttgaattgtcacctaaatagttgtattcca 303  Q
     ||||| |||||||||||||| ||||| ||||||||||||  |||| ||||||    
T  10664658 ctttaagaactccaaatccttagttgagttgtcacctaaactgttgaattcca 10664710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 160 - 440
Target Start/End: Complemental strand, 10599889 - 10599611
Alignment:
Q  160 gtggataaattgcctatgaaatttggcaagttgcctccaaaattgttattgtttatagaaagcacttgcaacttagtataatt-gtcaaagattttaaaa 258  Q
    ||||||||||| || ||  ||||| ||||  | ||||||||||| |||| | ||| ||| |||  |||||||||| || | || ||||| || || ||||    
T  10599889 gtggataaatttccaatagaattttgcaaactacctccaaaattattataggttaaagatagcgattgcaacttactacagtttgtcaatgacttcaaaa 10599790  T
Q  259 actccaaatcctttgttgaattgtcacctaaatagttgtattccaaatttagcaatagtagatcttttagccatcctagagttggaacttgtccaacaaa 358  Q
    ||| ||||||| |||||||  |||||||||||  |||   |||||||||||||||    ||||||||||||   |||||| |||||||||||||||||||    
T  10599789 actgcaaatccattgttgagctgtcacctaaaatgttcatttccaaatttagcaaataaagatcttttagcttccctagacttggaacttgtccaacaaa 10599690  T
Q  359 atagttttgaccgagatcaaatattgtaatgggagatgatgcatttgttatggaagtggggattggacctgagaattgattt 440  Q
    || ||| | |||||  ||||||| ||| |    ||| || |||||||  || ||||| ||||||||||||||||||| ||||    
T  10599689 atggttgtcaccgatttcaaataatgtca---aagaagaagcatttgaaattgaagtagggattggacctgagaatttattt 10599611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 464 - 551
Target Start/End: Complemental strand, 10610194 - 10610107
Alignment:
Q  464 aaacatgttgggtggaagagagccataaaagttattcattgttagtgtgagctcaataagtgatgagatattgtaaaaacaagaagga 551  Q
    |||||||||||||||||| ||||||| |||  ||||||| ||||||| ||| ||| |||||| |||||||||||||| ||||||||||    
T  10610194 aaacatgttgggtggaagtgagccattaaatctattcatggttagtgagagttcagtaagtgctgagatattgtaaagacaagaagga 10610107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 137 - 289
Target Start/End: Original strand, 10661470 - 10661623
Alignment:
Q  137 caacatatagctcaataagttcagtggataaattgcctatgaaatttggcaagttgcctccaaaattgttattgtttatagaaagcacttgcaacttagt 236  Q
    |||||||||||| | |||||| |||||||||||||||||  |||||||||||||| || |||||||  ||| ||  |||||||| ||||   |  |||||    
T  10661470 caacatatagctgactaagttgagtggataaattgcctacaaaatttggcaagttacccccaaaatgattactggatatagaaatcactcttagtttagt 10661569  T
Q  237 -ataattgtcaaagattttaaaaactccaaatcctttgttgaattgtcacctaa 289  Q
     |   ||||||| | ||| ||||||||||||||||| |||||||||||||||||    
T  10661570 gaagtttgtcaaggttttcaaaaactccaaatccttagttgaattgtcacctaa 10661623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 241 - 313
Target Start/End: Original strand, 10764622 - 10764694
Alignment:
Q  241 ttgtcaaagattttaaaaactccaaatcctttgttgaattgtcacctaaatagttgtattccaaatttagcaa 313  Q
    |||||||| ||||||||||||| |||||| |||| |||||||||||||||| ||| | |||||||||||||||    
T  10764622 ttgtcaaatattttaaaaactctaaatccattgtggaattgtcacctaaattgttttcttccaaatttagcaa 10764694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 137 - 208
Target Start/End: Original strand, 10653584 - 10653655
Alignment:
Q  137 caacatatagctcaataagttcagtggataaattgcctatgaaatttggcaagttgcctccaaaattgttat 208  Q
    |||||||||||| | |||||| |||||||||||||||||  |||||||||||||| ||||||||||| ||||    
T  10653584 caacatatagctgactaagttgagtggataaattgcctacaaaatttggcaagttacctccaaaattattat 10653655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 160 - 446
Target Start/End: Complemental strand, 10610511 - 10610227
Alignment:
Q  160 gtggataaattgcctatgaaatttggcaagttgcctccaaaattgttattgtttatagaaagcacttgcaacttagtataatt-gtcaaagattttaaaa 258  Q
    |||||||||||||| ||||||||||||||  | |||||||| || |||||   ||||||||||  ||  |  ||| || | || |||||| |||||||||    
T  10610511 gtggataaattgccaatgaaatttggcaaactacctccaaacttattattagatatagaaagcttttctagtttactacagtttgtcaaatattttaaaa 10610412  T
Q  259 actccaaatcctttgttgaattgtcacctaaatagttgtattccaaatttagcaatagtagatcttttagccatcctagagttggaacttgtccaacaaa 358  Q
    |||| |||||  | |||||||||| ||| |||||||||||||||||| | ||| |    ||||||  || |    ||||| |||||||||||||||| ||    
T  10610411 actctaaatctatagttgaattgttaccgaaatagttgtattccaaactcagccagtaaagatctggtaacttctctagacttggaacttgtccaaccaa 10610312  T
Q  359 atagttttgaccgagatcaaata-ttgtaatgggagatgatgcatttgttatggaagtggggattggacctgagaattgatttccccca 446  Q
    || ||||||||| | ||||| || |||||    | || || |||||||  ||||||   |||||||||||||||||||||||||| |||    
T  10610311 attgttttgacctaaatcaattatttgta----gggaagaagcatttgcaatggaaacagggattggacctgagaattgatttcctcca 10610227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 465 - 551
Target Start/End: Complemental strand, 10563510 - 10563424
Alignment:
Q  465 aacatgttgggtggaagagagccataaaagttattcattgttagtgtgagctcaataagtgatgagatattgtaaaaacaagaagga 551  Q
    |||||||||| ||||||| |||||  ||||||||||||   ||||| ||||||||| |||||||| |||||||||| ||||| ||||    
T  10563510 aacatgttggatggaagatagccagtaaagttattcatgactagtgagagctcaattagtgatgacatattgtaaatacaaggagga 10563424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 160 - 311
Target Start/End: Original strand, 10748423 - 10748575
Alignment:
Q  160 gtggataaattgcctatgaaatttggcaagttgcctccaaaattgttattgtttatagaaagcacttgcaacttagtataatt-gtcaaagattttaaaa 258  Q
    ||||||||| |||| ||| ||||||||||  | |||||||| || |||||   |||||||| |||||  |  ||| || |||| |||||| | |||||||    
T  10748423 gtggataaactgccaatggaatttggcaaactacctccaaacttattattacatatagaaaccacttctagtttactacaatttgtcaaatactttaaaa 10748522  T
Q  259 actccaaatcctttgttgaattgtcacctaaatagttgtattccaaatttagc 311  Q
    |||| |||||  | |||||||||| ||| |||||||||| |||||||||||||    
T  10748523 actctaaatcgatagttgaattgttaccgaaatagttgtcttccaaatttagc 10748575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 152 - 290
Target Start/End: Complemental strand, 7191814 - 7191675
Alignment:
Q  152 taagttcagtggataaattgcctatgaaatttggcaagttgcctccaaaattgttattgtttatagaaagcacttgcaacttagtataatt-gtcaaaga 250  Q
    |||||| |||||||||||| || ||| |||||||||| || ||||||||||| |||  |  |||||||| |||| | |  ||| || | || ||||| ||    
T  7191814 taagttgagtggataaattcccaatggaatttggcaaattacctccaaaattattaaaggatatagaaaacactagtagtttactacagtttgtcaagga 7191715  T
Q  251 ttttaaaaactccaaatcctttgttgaattgtcacctaaa 290  Q
    |||||||||||| |||||||| || ||||||| |||||||    
T  7191714 ttttaaaaactctaaatccttagtggaattgttacctaaa 7191675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 161 - 291
Target Start/End: Complemental strand, 10557720 - 10557589
Alignment:
Q  161 tggataaattgcctatgaaatttggcaagttgcctccaaaattgttattgtttatagaaagcacttgcaacttagtataatt-gtcaaagattttaaaaa 259  Q
    ||||||||||||||   |||||||||||  | ||||||||||| |||| |  |||||||  ||||||||||||| || | || ||||| |||||||||||    
T  10557720 tggataaattgcctgccaaatttggcaaactacctccaaaattattatgggatatagaacacacttgcaacttactacagttagtcaatgattttaaaaa 10557621  T
Q  260 ctccaaatcctttgttgaattgtcacctaaat 291  Q
       ||||||||| |||||||| ||||| ||||    
T  10557620 aatcaaatccttagttgaattttcaccaaaat 10557589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 20 - 122
Target Start/End: Original strand, 10747935 - 10748037
Alignment:
Q  20 taggaatatcaccaaacagattattttcagaaacatctagcttaccaatattttttagcatgccaagttctcttggcaagctactgctcaaaaagttctg 119  Q
    |||||||||||||| | |||| ||| ||||| |||||||||  | ||||||||||||| |  || | ||||||||| |||||||  ||||||||||| ||    
T  10747935 taggaatatcaccagatagatgattctcagagacatctagccaatcaatattttttagtaaacccacttctcttggtaagctaccactcaaaaagttatg 10748034  T
Q  120 tga 122  Q
    |||    
T  10748035 tga 10748037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 166 - 286
Target Start/End: Complemental strand, 10549588 - 10549467
Alignment:
Q  166 aaattgcctatgaaatttggcaagttgcctccaaaattgttattgtttatagaaagcacttgcaacttagtataatt-gtcaaagattttaaaaactcca 264  Q
    ||||| ||||||||| |||||||  | ||||||||||| |||| |  ||||||||   ||||||| ||| || |||| ||||| | ||||||||| || |    
T  10549588 aaattacctatgaaacttggcaaactacctccaaaattattatgggatatagaaaatgcttgcaaattactacaatttgtcaatggttttaaaaattcta 10549489  T
Q  265 aatcctttgttgaattgtcacc 286  Q
    ||||||| ||||||||||||||    
T  10549488 aatccttagttgaattgtcacc 10549467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 22 - 79
Target Start/End: Original strand, 9837250 - 9837307
Alignment:
Q  22 ggaatatcaccaaacagattattttcagaaacatctagcttaccaatattttttagca 79  Q
    ||||| |||||  |||||| ||||||||| ||||||||||||  ||||||||||||||    
T  9837250 ggaatgtcacccgacagatgattttcagagacatctagcttatgaatattttttagca 9837307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 399 - 448
Target Start/End: Complemental strand, 10579571 - 10579522
Alignment:
Q  399 gcatttgttatggaagtggggattggacctgagaattgatttcccccaat 448  Q
    |||||||  |||||||| ||||||||||| |||||||||||||| |||||    
T  10579571 gcatttgcaatggaagttgggattggaccagagaattgatttcctccaat 10579522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 399 - 448
Target Start/End: Original strand, 10590072 - 10590121
Alignment:
Q  399 gcatttgttatggaagtggggattggacctgagaattgatttcccccaat 448  Q
    |||||||  |||||||| ||||||||||| |||||||||||||| |||||    
T  10590072 gcatttgcaatggaagttgggattggaccagagaattgatttcctccaat 10590121  T

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Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 522 - 551
Target Start/End: Original strand, 10718681 - 10718710
Alignment:
Q  522 agtgatgagatattgtaaaaacaagaagga 551  Q
    ||||||||||||||||||||||||||||||    
T  10718681 agtgatgagatattgtaaaaacaagaagga 10718710  T

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Target: chr6 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 150 - 208
Target Start/End: Complemental strand, 12956892 - 12956834
Alignment:
Q  150 aataagttcagtggataaattgcctatgaaatttggcaagttgcctccaaaattgttat 208  Q
    ||||||||||||||||||||| |||||| |||||||||| | |||||||||||| ||||    
T  12956892 aataagttcagtggataaattccctatggaatttggcaaatggcctccaaaattattat 12956834  T

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Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 152 - 310
Target Start/End: Complemental strand, 12905999 - 12905840
Alignment:
Q  152 taagttcagtggataaattgcctatgaaatttggcaagttgcctccaaaattgttattgtttatagaaagcacttgcaacttagtataatt-gtcaaaga 250  Q
    ||||||||||||| || ||||||||| |||||||||| |  ||||||||||| |||   | ||| |||||||| |  |  ||| |  |||| |||||| |    
T  12905999 taagttcagtggaaaagttgcctatggaatttggcaaatgtcctccaaaattattagaatctattgaaagcacgtatagtttactgcaatttgtcaaata 12905900  T
Q  251 ttttaaaaactccaaatcctttgttgaattgtcacctaaatagttgtattccaaatttag 310  Q
    |||||||||||| |||||||| |||||| ||| |||||||| |||| || ||||| ||||    
T  12905899 ttttaaaaactctaaatccttagttgaaatgttacctaaattgttgaatcccaaacttag 12905840  T

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Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 153 - 291
Target Start/End: Complemental strand, 12931087 - 12930948
Alignment:
Q  153 aagttcagtggataaattgcctatgaaatttggcaagttgcctccaaaattgttattgtttatagaaagcacttgcaacttagtataa-ttgtcaaagat 251  Q
    ||||||||| ||||||||||||||| |||||||||| |  ||||||||||| ||||    ||| |||||||| |  |  ||| |  || |||||||| ||    
T  12931087 aagttcagtcgataaattgcctatggaatttggcaaatgacctccaaaattattataagatatcgaaagcacgtatagtttactgcaatttgtcaaatat 12930988  T
Q  252 tttaaaaactccaaatcctttgttgaattgtcacctaaat 291  Q
    ||||||||||| |||||| | |||||||||| ||||||||    
T  12930987 tttaaaaactctaaatccatagttgaattgttacctaaat 12930948  T

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Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 153 - 188
Target Start/End: Complemental strand, 12947452 - 12947417
Alignment:
Q  153 aagttcagtggataaattgcctatgaaatttggcaa 188  Q
    ||||||||||||||||||||||||| ||||||||||    
T  12947452 aagttcagtggataaattgcctatggaatttggcaa 12947417  T

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Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 465 - 551
Target Start/End: Complemental strand, 12947124 - 12947038
Alignment:
Q  465 aacatgttgggtggaagagagccataaaagttattcattgttagtgtgagctcaataagtgatgagatattgtaaaaacaagaagga 551  Q
    ||||||||||||| || |||||||| || || ||||| |||||  |  ||  ||||||||||||||||||| |||| ||||||||||    
T  12947124 aacatgttgggtgcaaaagagccatgaaggtgattcagtgttaccgaaaggacaataagtgatgagatattataaagacaagaagga 12947038  T

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Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 20 - 125
Target Start/End: Complemental strand, 12947933 - 12947828
Alignment:
Q  20 taggaatatcaccaaacagattattttcagaaacatcta--gcttaccaatattttttagcatgccaagttctcttggcaagctactgctcaaaaagttc 117  Q
    |||||||||||||| | |||| ||| ||||| |||||||  ||||  |||||||||||| ||| || | ||||||||| |||||||  |||||| ||||     
T  12947933 taggaatatcaccagatagatgattctcagagacatctaatgctt--caatattttttaacatacccacttctcttggtaagctaccactcaaagagtta 12947836  T
Q  118 tgtgacaa 125  Q
    ||||||||    
T  12947835 tgtgacaa 12947828  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 241 - 310
Target Start/End: Original strand, 17924893 - 17924962
Alignment:
Q  241 ttgtcaaagattttaaaaactccaaatcctttgttgaattgtcacctaaatagttgtattccaaatttag 310  Q
    |||||||| ||||||||||||| |||||| | |||||||| |||||||||| ||| | ||||||||||||    
T  17924893 ttgtcaaatattttaaaaactctaaatccatagttgaattatcacctaaattgttttcttccaaatttag 17924962  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 152 - 208
Target Start/End: Original strand, 17924803 - 17924859
Alignment:
Q  152 taagttcagtggataaattgcctatgaaatttggcaagttgcctccaaaattgttat 208  Q
    ||||||||||||||||||| |||||| |||||||||| |  ||||||||||| ||||    
T  17924803 taagttcagtggataaattccctatggaatttggcaaatgacctccaaaattattat 17924859  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 399 - 448
Target Start/End: Original strand, 31468804 - 31468853
Alignment:
Q  399 gcatttgttatggaagtggggattggacctgagaattgatttcccccaat 448  Q
    ||||||| ||||||||| ||||||||||||||||||||||| || |||||    
T  31468804 gcatttgatatggaagttgggattggacctgagaattgattcccaccaat 31468853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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