View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1696_high_20 (Length: 305)
Name: NF1696_high_20
Description: NF1696
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1696_high_20 |
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Alignment Details
Target: chr3 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 13 - 253
Target Start/End: Complemental strand, 28833646 - 28833403
Alignment:
| Q |
13 |
aatatacgaaactatagctgatatactatcgcagatactatcacagagatatacacaattagccgagctacataaacaaatggtcgtgttatattgtttg |
112 |
Q |
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| T |
28833646 |
aatatacgaaactatagctgatatactatcgcagatactatcacagagatatacacaattagcccagctacataaacaaatggtcgtgttatattgtttg |
28833547 |
T |
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| Q |
113 |
tgatttgctttttcattaannnnnnngttac---ttgttgttctaacaaaattggcatcaaatggcgattaaccctggtgcgaaatcattttcttttata |
209 |
Q |
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| T |
28833546 |
tgatttgctttttcattaatttttttgttacttgttgttgttctaacaaaattggcatcaaatggcgattaaccctggtgcgaaatcattttcttttata |
28833447 |
T |
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| Q |
210 |
atccataacagaagtccataacctggttaataacaaatctattg |
253 |
Q |
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| T |
28833446 |
atccgtaacagaagtccataacctggttaataacaaatctattg |
28833403 |
T |
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