View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1696_high_28 (Length: 268)

Name: NF1696_high_28
Description: NF1696
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1696_high_28
NF1696_high_28
[»] chr8 (11 HSPs)
chr8 (1-166)||(7780522-7780687)
chr8 (1-166)||(7820612-7820777)
chr8 (1-122)||(25219846-25219972)
chr8 (1-119)||(30305963-30306085)
chr8 (1-104)||(37915314-37915422)
chr8 (10-89)||(14764484-14764563)
chr8 (12-104)||(21114963-21115061)
chr8 (1-89)||(31979801-31979889)
chr8 (19-80)||(13424496-13424557)
chr8 (19-80)||(14713145-14713206)
chr8 (1-63)||(33862662-33862724)
[»] chr5 (23 HSPs)
chr5 (1-166)||(10023904-10024074)
chr5 (1-157)||(26792592-26792753)
chr5 (1-166)||(8429853-8430023)
chr5 (1-166)||(30347758-30347928)
chr5 (1-122)||(24631078-24631204)
chr5 (1-166)||(27879858-27880029)
chr5 (1-89)||(4050661-4050749)
chr5 (1-86)||(30313240-30313325)
chr5 (1-89)||(25544021-25544109)
chr5 (1-89)||(43448335-43448423)
chr5 (33-122)||(37371729-37371824)
chr5 (19-89)||(43525174-43525244)
chr5 (1-85)||(15033857-15033939)
chr5 (1-69)||(3688820-3688888)
chr5 (1-69)||(3877897-3877965)
chr5 (23-89)||(6088073-6088139)
chr5 (19-89)||(18115662-18115732)
chr5 (19-80)||(14194166-14194227)
chr5 (1-75)||(37260185-37260260)
chr5 (19-80)||(17872194-17872255)
chr5 (19-80)||(26831498-26831559)
chr5 (1-55)||(39882072-39882126)
chr5 (23-80)||(2262289-2262346)
[»] chr2 (15 HSPs)
chr2 (1-166)||(36047972-36048142)
chr2 (1-166)||(26955200-26955370)
chr2 (1-122)||(39441947-39442073)
chr2 (10-166)||(28667463-28667625)
chr2 (10-166)||(37826297-37826459)
chr2 (1-122)||(41921451-41921577)
chr2 (12-104)||(24270239-24270336)
chr2 (1-104)||(21394199-21394307)
chr2 (19-86)||(35608756-35608823)
chr2 (19-80)||(24244735-24244796)
chr2 (1-80)||(40488967-40489047)
chr2 (25-80)||(17687649-17687704)
chr2 (23-80)||(2881771-2881828)
chr2 (19-80)||(3641932-3641993)
chr2 (23-80)||(27508245-27508302)
[»] scaffold0636 (1 HSPs)
scaffold0636 (1-122)||(39-165)
[»] chr4 (12 HSPs)
chr4 (1-122)||(55560245-55560371)
chr4 (16-166)||(6244694-6244849)
chr4 (1-89)||(31920324-31920412)
chr4 (1-166)||(49788106-49788277)
chr4 (1-109)||(35854737-35854849)
chr4 (12-89)||(49709031-49709108)
chr4 (1-89)||(786772-786858)
chr4 (19-89)||(618608-618678)
chr4 (19-80)||(37532700-37532761)
chr4 (1-62)||(38517436-38517497)
chr4 (1-55)||(1859565-1859619)
chr4 (88-122)||(38517405-38517439)
[»] chr3 (22 HSPs)
chr3 (1-122)||(10108795-10108921)
chr3 (1-157)||(10229999-10230160)
chr3 (1-157)||(10233594-10233755)
chr3 (1-122)||(27273221-27273347)
chr3 (1-122)||(31628-31753)
chr3 (1-104)||(41764644-41764752)
chr3 (1-89)||(10037497-10037585)
chr3 (1-89)||(15329844-15329932)
chr3 (1-104)||(23092377-23092485)
chr3 (13-89)||(11361111-11361187)
chr3 (1-89)||(11367500-11367588)
chr3 (19-89)||(9999273-9999343)
chr3 (19-89)||(10234285-10234355)
chr3 (19-89)||(37803048-37803118)
chr3 (1-88)||(47691892-47691977)
chr3 (19-89)||(10230693-10230762)
chr3 (19-89)||(10040928-10041000)
chr3 (19-80)||(10109472-10109533)
chr3 (21-77)||(10970196-10970252)
chr3 (19-80)||(41221070-41221131)
chr3 (23-80)||(50409033-50409090)
chr3 (175-205)||(24677062-24677092)
[»] scaffold0550 (1 HSPs)
scaffold0550 (1-166)||(4806-4976)
[»] chr7 (8 HSPs)
chr7 (1-166)||(42230927-42231097)
chr7 (5-122)||(12787264-12787386)
chr7 (1-119)||(7035524-7035647)
chr7 (1-109)||(9002399-9002514)
chr7 (1-104)||(45122630-45122737)
chr7 (1-89)||(21071330-21071419)
chr7 (19-80)||(5829829-5829890)
chr7 (19-80)||(22843403-22843464)
[»] chr6 (10 HSPs)
chr6 (1-166)||(31512769-31512939)
chr6 (1-166)||(29642631-29642801)
chr6 (1-89)||(12516242-12516330)
chr6 (1-89)||(24195756-24195844)
chr6 (1-89)||(15330393-15330481)
chr6 (19-80)||(10186417-10186478)
chr6 (1-89)||(12518470-12518556)
chr6 (23-80)||(4221304-4221361)
chr6 (19-80)||(30880927-30880988)
chr6 (20-89)||(14906353-14906422)
[»] scaffold0090 (1 HSPs)
scaffold0090 (1-122)||(50217-50343)
[»] chr1 (16 HSPs)
chr1 (1-122)||(36518755-36518881)
chr1 (1-122)||(52499548-52499674)
chr1 (13-166)||(6312281-6312439)
chr1 (1-166)||(18147461-18147631)
chr1 (1-109)||(37391422-37391534)
chr1 (1-89)||(25075132-25075220)
chr1 (1-89)||(16040879-16040967)
chr1 (1-89)||(16748942-16749030)
chr1 (1-104)||(48776604-48776712)
chr1 (19-89)||(28960928-28960998)
chr1 (1-89)||(48240067-48240153)
chr1 (19-89)||(7101825-7101895)
chr1 (19-86)||(2454046-2454113)
chr1 (19-89)||(36206073-36206143)
chr1 (19-89)||(16043219-16043289)
chr1 (46-80)||(12450841-12450875)
[»] scaffold0582 (1 HSPs)
scaffold0582 (1-166)||(10192-10362)
[»] scaffold0472 (1 HSPs)
scaffold0472 (1-122)||(13280-13406)
[»] scaffold0118 (1 HSPs)
scaffold0118 (1-166)||(29843-30016)
[»] scaffold0029 (1 HSPs)
scaffold0029 (1-88)||(133144-133231)
[»] scaffold0499 (1 HSPs)
scaffold0499 (1-89)||(10000-10088)
[»] scaffold0073 (2 HSPs)
scaffold0073 (1-89)||(23448-23536)
scaffold0073 (1-89)||(18313-18401)
[»] scaffold0002 (1 HSPs)
scaffold0002 (12-88)||(310983-311059)
[»] scaffold0003 (2 HSPs)
scaffold0003 (1-89)||(164381-164469)
scaffold0003 (1-89)||(172496-172584)
[»] scaffold0888 (1 HSPs)
scaffold0888 (19-89)||(1019-1089)
[»] scaffold0025 (1 HSPs)
scaffold0025 (19-89)||(13349-13419)
[»] scaffold0262 (1 HSPs)
scaffold0262 (1-89)||(17865-17954)
[»] scaffold0012 (1 HSPs)
scaffold0012 (19-80)||(98113-98174)
[»] scaffold0134 (1 HSPs)
scaffold0134 (1-80)||(6508-6588)
[»] scaffold1370 (1 HSPs)
scaffold1370 (19-89)||(1462-1534)
[»] scaffold0532 (1 HSPs)
scaffold0532 (19-80)||(3610-3671)
[»] scaffold0107 (1 HSPs)
scaffold0107 (19-89)||(44861-44933)
[»] scaffold1424 (1 HSPs)
scaffold1424 (1-80)||(551-631)
[»] scaffold0017 (1 HSPs)
scaffold0017 (1-80)||(185432-185512)
[»] scaffold0022 (1 HSPs)
scaffold0022 (19-80)||(125091-125152)


Alignment Details
Target: chr8 (Bit Score: 129; Significance: 8e-67; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 129; E-Value: 8e-67
Query Start/End: Original strand, 1 - 166
Target Start/End: Complemental strand, 7780687 - 7780522
Alignment:
Q  1 aattaataaaagtataataatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaagatgatattcatatcgaatt 100  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7780687 aattagtaaaagtataataatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaagatgatattcatatcgaatt 7780588  T
Q  101 taaaatctacacatttgatcaannnnnnnnnnnatttccccgtgctggcacgggtcagtgtactag 166  Q
    ||||||||||||||||||||||           |||||||||||||||||||||||||||||||||    
T  7780587 taaaatctacacatttgatcaaaaaaaaaatttatttccccgtgctggcacgggtcagtgtactag 7780522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 129; E-Value: 8e-67
Query Start/End: Original strand, 1 - 166
Target Start/End: Complemental strand, 7820777 - 7820612
Alignment:
Q  1 aattaataaaagtataataatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaagatgatattcatatcgaatt 100  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7820777 aattagtaaaagtataataatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaagatgatattcatatcgaatt 7820678  T
Q  101 taaaatctacacatttgatcaannnnnnnnnnnatttccccgtgctggcacgggtcagtgtactag 166  Q
    ||||||||||||||||||||||           |||||||||||||||||||||||||||||||||    
T  7820677 taaaatctacacatttgatcaaaaaaaaaatttatttccccgtgctggcacgggtcagtgtactag 7820612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 25219846 - 25219972
Alignment:
Q  1 aattaataaaagtataataatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaagatgata-----ttcatatc 95  Q
    ||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     ||||||||    
T  25219846 aattagtacaagtataataatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaagatgatatttttttcatatc 25219945  T
Q  96 gaatttaaaatctacacatttgatcaa 122  Q
    |||||||||||||| ||||||||||||    
T  25219946 gaatttaaaatctatacatttgatcaa 25219972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 1 - 119
Target Start/End: Complemental strand, 30306085 - 30305963
Alignment:
Q  1 aattaataaaagtataataatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaagatgata-----ttcatatc 95  Q
    ||||| || |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     ||||||||    
T  30306085 aattagtacaagtataa-aatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaagatgatatttttttcatatc 30305987  T
Q  96 gaatttaaaatctacacatttgat 119  Q
    |||||||||||||| |||||||||    
T  30305986 gaatttaaaatctatacatttgat 30305963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 37915314 - 37915422
Alignment:
Q  1 aattaataaaagtataataatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaagatgatatt-----catatc 95  Q
    ||||| || ||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||     ||||||    
T  37915314 aattagtacaagtataataatccaaatacttttatcgttatatacaatgtttagatatttcaaaatatatacaaaattaagatgatatttttttcatatc 37915413  T
Q  96 gaatttaaa 104  Q
    |||||||||    
T  37915414 gaatttaaa 37915422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 10 - 89
Target Start/End: Complemental strand, 14764563 - 14764484
Alignment:
Q  10 aagtataataatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaagatgatatt 89  Q
    |||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  14764563 aagtataacaatccaaatacttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaagattatatt 14764484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 12 - 104
Target Start/End: Original strand, 21114963 - 21115061
Alignment:
Q  12 gtataataatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatac-aaaattaagatgata-----ttcatatcgaatttaaa 104  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||     |||||||||||||||||    
T  21114963 gtataataatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaaattaagattatatatttttcatatcgaatttaaa 21115061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 31979801 - 31979889
Alignment:
Q  1 aattaataaaagtataataatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaagatgatatt 89  Q
    ||||| || ||||||||||||||||||| ||| ||||||||||||||||||||| |||||  ||||||||||||||||||||| |||||    
T  31979801 aattagtacaagtataataatccaaatactttgatcgttatatgcaatgtttagctattttgaaatatatacaaaattaagattatatt 31979889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 19 - 80
Target Start/End: Complemental strand, 13424557 - 13424496
Alignment:
Q  19 aatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaa 80  Q
    |||||||||| ||| |||||||| ||||||||||||||||||||||||||||||||||||||    
T  13424557 aatccaaatactttaatcgttatgtgcaatgtttagatatttcaaaatatatacaaaattaa 13424496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 19 - 80
Target Start/End: Complemental strand, 14713206 - 14713145
Alignment:
Q  19 aatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaa 80  Q
    |||||||||| ||| |||||||| ||||||||||||||||||||||||||||||||||||||    
T  14713206 aatccaaatactttaatcgttatgtgcaatgtttagatatttcaaaatatatacaaaattaa 14713145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 33862662 - 33862724
Alignment:
Q  1 aattaataaaagtataataatccaaatatttttatcgttatatgcaatgtttagatatttcaa 63  Q
    ||||| || ||||||||||||||||||| |||||||||||||| |||||||||||||||||||    
T  33862662 aattagtacaagtataataatccaaatacttttatcgttatatacaatgtttagatatttcaa 33862724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 98; Significance: 2e-48; HSPs: 23)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 1 - 166
Target Start/End: Complemental strand, 10024074 - 10023904
Alignment:
Q  1 aattaataaaagtataataatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaagatgata-----ttcatatc 95  Q
    ||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     ||||||||    
T  10024074 aattagtacaagtataataatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaagatgatatttttttcatatc 10023975  T
Q  96 gaatttaaaatctacacatttgatcaannnnnnnnnnnatttccccgtgctggcacgggtcagtgtactag 166  Q
    |||||||||||||| ||||||||||||           |||||||||||||||||||||||| | ||||||    
T  10023974 gaatttaaaatctatacatttgatcaaaaaagttttttatttccccgtgctggcacgggtcactatactag 10023904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 1 - 157
Target Start/End: Complemental strand, 26792753 - 26792592
Alignment:
Q  1 aattaataaaagtataataatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaagatgata-----ttcatatc 95  Q
    ||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     ||||||||    
T  26792753 aattagtacaagtataataatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaagatgatatttttttcatatc 26792654  T
Q  96 gaatttaaaatctacacatttgatcaannnnnnnnnnnatttccccgtgctggcacgggtca 157  Q
    |||||||||||||| ||||||||||||           ||||||||||||||||||||||||    
T  26792653 gaatttaaaatctatacatttgatcaaaaaagattattatttccccgtgctggcacgggtca 26792592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 1 - 166
Target Start/End: Original strand, 8429853 - 8430023
Alignment:
Q  1 aattaataaaagtataataatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaagatgata-----ttcatatc 95  Q
    ||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||     ||||||||    
T  8429853 aattagtacaagtataataatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaatgaagatgatatttttttcatatc 8429952  T
Q  96 gaatttaaaatctacacatttgatcaannnnnnnnnnnatttccccgtgctggcacgggtcagtgtactag 166  Q
    |||||||||||||| ||||||||||||           |||||||||||||||||||||||| | ||||||    
T  8429953 gaatttaaaatctatacatttgatcaaaaaagttttttatttccccgtgctggcacgggtcactatactag 8430023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 1 - 166
Target Start/End: Original strand, 30347758 - 30347928
Alignment:
Q  1 aattaataaaagtataataatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaagatgata-----ttcatatc 95  Q
    ||||| || ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||     ||||||||    
T  30347758 aattagtacaagtataataatccaaatatttttatcattatatgcaatgtttagatatttcaaaatatatacaaaattaagatgatatttttttcatatc 30347857  T
Q  96 gaatttaaaatctacacatttgatcaannnnnnnnnnnatttccccgtgctggcacgggtcagtgtactag 166  Q
    |||||||||||||| ||||||||||||           |||||||||||||||||||||||| | ||||||    
T  30347858 gaatttaaaatctatacatttgatcaaaaatgttttttatttccccgtgctggcacgggtcactatactag 30347928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 24631078 - 24631204
Alignment:
Q  1 aattaataaaagtataataatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaagatgata-----ttcatatc 95  Q
    ||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     ||||||||    
T  24631078 aattagtacaagtataataatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaagatgatatttttttcatatc 24631177  T
Q  96 gaatttaaaatctacacatttgatcaa 122  Q
    |||||||||||||| |||||| |||||    
T  24631178 gaatttaaaatctatacatttaatcaa 24631204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 1 - 166
Target Start/End: Complemental strand, 27880029 - 27879858
Alignment:
Q  1 aattaataaaagtataataatccaaa-tatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaagatgata-----ttcatat 94  Q
    ||||| || ||||||||||||||||| |||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||     |||||||    
T  27880029 aattagtacaagtataataatccaaaatatttttatcgttatatggaatttttagatatttcaaaatatatacaaaattaagatgatatttttttcatat 27879930  T
Q  95 cgaatttaaaatctacacatttgatcaannnnnnnnnnnatttccccgtgctggcacgggtcagtgtactag 166  Q
    ||||||||||||||| ||||||||||||           |||||||||||||||||||||||| ||||||||    
T  27879929 cgaatttaaaatctatacatttgatcaaaaaagttttttatttccccgtgctggcacgggtcactgtactag 27879858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 4050749 - 4050661
Alignment:
Q  1 aattaataaaagtataataatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaagatgatatt 89  Q
    ||||| || ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4050749 aattagtacaagtataataatccaaatacttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaagatgatatt 4050661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 30313325 - 30313240
Alignment:
Q  1 aattaataaaagtataataatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaagatgat 86  Q
    ||||| || ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30313325 aattagtacaagtataataatccaaatacttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaagatgat 30313240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 25544021 - 25544109
Alignment:
Q  1 aattaataaaagtataataatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaagatgatatt 89  Q
    ||||| || ||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  25544021 aattagtacaagtataataatccaaatacttttatcgttatatgcgatgtttagatatttcaaaatatatacaaaattaagatgatatt 25544109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 43448423 - 43448335
Alignment:
Q  1 aattaataaaagtataataatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaagatgatatt 89  Q
    ||||| || |||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||| |||||    
T  43448423 aattagtacaagtataataatccaaatatttttatcgttatatgcaatgtttaaatttttcaaaatatatacaaaattaagattatatt 43448335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 33 - 122
Target Start/End: Complemental strand, 37371824 - 37371729
Alignment:
Q  33 tatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaagatgata------ttcatatcgaatttaaaatctacacatttgatcaa 122  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||      |||||||||||||||||||||| |||||| |||||    
T  37371824 tatcattatatgcaatgtttagatatttcaaaatatatacaaaattaagatgatattttttttcatatcgaatttaaaatctatacattttatcaa 37371729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 19 - 89
Target Start/End: Original strand, 43525174 - 43525244
Alignment:
Q  19 aatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaagatgatatt 89  Q
    |||||||||| ||| ||| |||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  43525174 aatccaaatactttaatcattatgtgcaatgtttagatatttcaaaatatatacaaaattaagatgatatt 43525244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 85
Target Start/End: Original strand, 15033857 - 15033939
Alignment:
Q  1 aattaataaaagtataataatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaagatga 85  Q
    |||||||| ||||||||  ||||||||| ||| |||||||| |||||||||||||||||||||||||||| ||||||||||||||    
T  15033857 aattaatataagtataa--atccaaatactttgatcgttatgtgcaatgtttagatatttcaaaatatattcaaaattaagatga 15033939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 3688888 - 3688820
Alignment:
Q  1 aattaataaaagtataataatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatata 69  Q
    ||||| || ||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||    
T  3688888 aattagtacaagtataataatccaaatacttttatcgttatatgcaatgtttagatatttcaaattata 3688820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 3877897 - 3877965
Alignment:
Q  1 aattaataaaagtataataatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatata 69  Q
    ||||| || ||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||    
T  3877897 aattagtacaagtataataatccaaatacttttatcgttatatgcaatgtttagatatttcaaattata 3877965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 23 - 89
Target Start/End: Complemental strand, 6088139 - 6088073
Alignment:
Q  23 caaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaagatgatatt 89  Q
    |||||| ||| |||||||| |||||||||||||||||||||| ||||||||||||||||||||||||    
T  6088139 caaatactttaatcgttatgtgcaatgtttagatatttcaaactatatacaaaattaagatgatatt 6088073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 19 - 89
Target Start/End: Complemental strand, 18115732 - 18115662
Alignment:
Q  19 aatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaagatgatatt 89  Q
    |||||||||| ||| ||| |||  |||||||||||||||||||||||||||||||||||||||||||||||    
T  18115732 aatccaaatactttaatcattaagtgcaatgtttagatatttcaaaatatatacaaaattaagatgatatt 18115662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 19 - 80
Target Start/End: Original strand, 14194166 - 14194227
Alignment:
Q  19 aatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaa 80  Q
    |||||||||| ||| |||||||| ||||||||||||||||||||||||||||||||||||||    
T  14194166 aatccaaatactttaatcgttatgtgcaatgtttagatatttcaaaatatatacaaaattaa 14194227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 37260260 - 37260185
Alignment:
Q  1 aattaataaaagtataataatccaaatatttttatcgttatatgcaatgtttagatat-ttcaaaatatatacaaa 75  Q
    ||||| || ||||||||||||||||||| ||||||| ||||||||||||||||||||| | |||||||||||||||    
T  37260260 aattagtacaagtataataatccaaatacttttatcattatatgcaatgtttagatatatacaaaatatatacaaa 37260185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 19 - 80
Target Start/End: Original strand, 17872194 - 17872255
Alignment:
Q  19 aatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaa 80  Q
    |||||||||| ||| |||||||||||||||||||||||||||  ||||||||||||||||||    
T  17872194 aatccaaatactttaatcgttatatgcaatgtttagatatttttaaatatatacaaaattaa 17872255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 19 - 80
Target Start/End: Complemental strand, 26831559 - 26831498
Alignment:
Q  19 aatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaa 80  Q
    |||||||||| ||| |||| ||| ||||||||||||||||||||||||||||||||||||||    
T  26831559 aatccaaatactttaatcgctatgtgcaatgtttagatatttcaaaatatatacaaaattaa 26831498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 39882126 - 39882072
Alignment:
Q  1 aattaataaaagtataataatccaaatatttttatcgttatatgcaatgtttaga 55  Q
    ||||| || ||||||||||||||| ||||||||||||||||||||||||||||||    
T  39882126 aattagtacaagtataataatccatatatttttatcgttatatgcaatgtttaga 39882072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 23 - 80
Target Start/End: Original strand, 2262289 - 2262346
Alignment:
Q  23 caaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaa 80  Q
    |||||| ||| |||||||| ||||||||||||||||||||||||||||| ||||||||    
T  2262289 caaatactttaatcgttatctgcaatgtttagatatttcaaaatatatataaaattaa 2262346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 98; Significance: 2e-48; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 1 - 166
Target Start/End: Original strand, 36047972 - 36048142
Alignment:
Q  1 aattaataaaagtataataatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaagatgata-----ttcatatc 95  Q
    ||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     ||||||||    
T  36047972 aattagtacaagtataataatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaagatgatatttttttcatatc 36048071  T
Q  96 gaatttaaaatctacacatttgatcaannnnnnnnnnnatttccccgtgctggcacgggtcagtgtactag 166  Q
    |||||||||||||| ||||||||||||           |||||||||||||||||||||||| | ||||||    
T  36048072 gaatttaaaatctatacatttgatcaaaaaagttttttatttccccgtgctggcacgggtcattatactag 36048142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 1 - 166
Target Start/End: Original strand, 26955200 - 26955370
Alignment:
Q  1 aattaataaaagtataataatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaagatgata-----ttcatatc 95  Q
    ||||| || ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     ||||||||    
T  26955200 aattagtacaagtataataatctaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaagatgatatttttttcatatc 26955299  T
Q  96 gaatttaaaatctacacatttgatcaannnnnnnnnnnatttccccgtgctggcacgggtcagtgtactag 166  Q
    |||||||||||||| ||||||||||||           |||||||||||||||||||||||| | ||||||    
T  26955300 gaatttaaaatctatacatttgatcaaaaaagttttttatttccccgtgctggcacgggtcactatactag 26955370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 39441947 - 39442073
Alignment:
Q  1 aattaataaaagtataataatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaagatgata-----ttcatatc 95  Q
    ||||| || ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     ||||||||    
T  39441947 aattagtacaagtataatgatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaagatgatatttttttcatatc 39442046  T
Q  96 gaatttaaaatctacacatttgatcaa 122  Q
    ||||||||||| || || |||||||||    
T  39442047 gaatttaaaatttatacttttgatcaa 39442073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 10 - 166
Target Start/End: Original strand, 28667463 - 28667625
Alignment:
Q  10 aagtataataatccaaatatttt-tatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaagatgata-----ttcatatcgaatttaa 103  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||| |||||||||     ||||||||||||||||    
T  28667463 aagtataataatccaaatattttttatcgttatatgcaatgtttagatattttaaaatatatacaaaatgaagatgatatttttttcatatcgaatttaa 28667562  T
Q  104 aatctacacatttgatcaannnnnnnnnnnatttccccgtgctggcacgggtcagtgtactag 166  Q
    |||||| |||||| |||||           |||||||||||||||||||||||| | ||||||    
T  28667563 aatctatacatttaatcaaaaaagttttttatttccccgtgctggcacgggtcactatactag 28667625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 10 - 166
Target Start/End: Original strand, 37826297 - 37826459
Alignment:
Q  10 aagtataataatccaaatatttt-tatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaagatgata-----ttcatatcgaatttaa 103  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||| |||||||||     ||||||||||||||||    
T  37826297 aagtataataatccaaatattttttatcgttatatgcaatgtttagatattttaaaatatatacaaaatgaagatgatatttttttcatatcgaatttaa 37826396  T
Q  104 aatctacacatttgatcaannnnnnnnnnnatttccccgtgctggcacgggtcagtgtactag 166  Q
    |||||| |||||| |||||           |||||||||||||||||||||||| | ||||||    
T  37826397 aatctatacatttaatcaaaaaagttttttatttccccgtgctggcacgggtcactatactag 37826459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 41921451 - 41921577
Alignment:
Q  1 aattaataaaagtataataatccaaatatttt-tatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaagatgata----ttcatatc 95  Q
    ||||| || ||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||| |||||||||    ||||||||    
T  41921451 aattagtacaagtataataatccaaatattttttatcgttatatgcaatgtttagatattttaaaatatatacaaaatgaagatgatattttttcatatc 41921550  T
Q  96 gaatttaaaatctacacatttgatcaa 122  Q
    |||||||||||||| |||||| |||||    
T  41921551 gaatttaaaatctatacatttaatcaa 41921577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 12 - 104
Target Start/End: Original strand, 24270239 - 24270336
Alignment:
Q  12 gtataataatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaagatgata-----ttcatatcgaatttaaa 104  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||     |||||||||||||||||    
T  24270239 gtataataatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaagattatatatttttcatatcgaatttaaa 24270336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 21394307 - 21394199
Alignment:
Q  1 aattaataaaagtataataatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaagatgata-----ttcatatc 95  Q
    ||||| || ||||||||||||| ||||||||||||||||||||||| ||||||||||||| ||||||||||||||| |||||| |||     ||||||||    
T  21394307 aattagtacaagtataataatctaaatatttttatcgttatatgcagtgtttagatattttaaaatatatacaaaaataagattatatatttttcatatc 21394208  T
Q  96 gaatttaaa 104  Q
    |||||||||    
T  21394207 gaatttaaa 21394199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 19 - 86
Target Start/End: Complemental strand, 35608823 - 35608756
Alignment:
Q  19 aatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaagatgat 86  Q
    |||||| ||| ||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  35608823 aatccagatactttaatcgttatgtgcaatgtttagatatttcaaaatatatacaaaattaagatgat 35608756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 19 - 80
Target Start/End: Complemental strand, 24244796 - 24244735
Alignment:
Q  19 aatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaa 80  Q
    |||||||||| ||| |||||||| ||||||||||||||||||||||||||||||||||||||    
T  24244796 aatccaaatactttaatcgttatgtgcaatgtttagatatttcaaaatatatacaaaattaa 24244735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 80
Target Start/End: Original strand, 40488967 - 40489047
Alignment:
Q  1 aattaataaaagtataataa-tccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaa 80  Q
    ||||| || ||||||||||| || ||||| ||| |||||||| |||||||||||||||||| |||||||||||||||||||    
T  40488967 aattagtataagtataataaatctaaatactttaatcgttatgtgcaatgtttagatatttaaaaatatatacaaaattaa 40489047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 25 - 80
Target Start/End: Original strand, 17687649 - 17687704
Alignment:
Q  25 aatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaa 80  Q
    |||| ||| |||||||| ||||||||||||||||||||||||||||||||||||||    
T  17687649 aatactttaatcgttatgtgcaatgtttagatatttcaaaatatatacaaaattaa 17687704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 23 - 80
Target Start/End: Original strand, 2881771 - 2881828
Alignment:
Q  23 caaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaa 80  Q
    |||||| ||| || ||||| ||||||||||||||||||||||||||||||||||||||    
T  2881771 caaatactttaattgttatgtgcaatgtttagatatttcaaaatatatacaaaattaa 2881828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 19 - 80
Target Start/End: Complemental strand, 3641993 - 3641932
Alignment:
Q  19 aatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaa 80  Q
    |||| ||||| ||| |||||||| |||||||||| |||||||||||||||||||||||||||    
T  3641993 aatctaaatactttaatcgttatgtgcaatgtttggatatttcaaaatatatacaaaattaa 3641932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 23 - 80
Target Start/End: Complemental strand, 27508302 - 27508245
Alignment:
Q  23 caaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaa 80  Q
    |||||| ||| |||||||| |||||||||||||||||| |||||||||||||||||||    
T  27508302 caaatactttaatcgttatgtgcaatgtttagatattttaaaatatatacaaaattaa 27508245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0636 (Bit Score: 95; Significance: 1e-46; HSPs: 1)
Name: scaffold0636
Description:

Target: scaffold0636; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 39 - 165
Alignment:
Q  1 aattaataaaagtataataatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaagatgata-----ttcatatc 95  Q
    ||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     ||||||||    
T  39 aattagtacaagtataataatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaagatgatatttttttcatatc 138  T
Q  96 gaatttaaaatctacacatttgatcaa 122  Q
    |||||||||||||| ||||||||||||    
T  139 gaatttaaaatctatacatttgatcaa 165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 95; Significance: 1e-46; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 55560245 - 55560371
Alignment:
Q  1 aattaataaaagtataataatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaagatgata-----ttcatatc 95  Q
    ||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     ||||||||    
T  55560245 aattagtacaagtataataatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaagatgatatttttttcatatc 55560344  T
Q  96 gaatttaaaatctacacatttgatcaa 122  Q
    |||||||||||||| ||||||||||||    
T  55560345 gaatttaaaatctatacatttgatcaa 55560371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 16 - 166
Target Start/End: Complemental strand, 6244849 - 6244694
Alignment:
Q  16 aataatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaagatgata-----ttcatatcgaatttaaaatctac 110  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||     ||||||||||||||||||||||     
T  6244849 aataatccaaatatttttatcgttgtatgcaatgtttagatatttcaaaatatatacaaaattaagattatatttttttcatatcgaatttaaaatctat 6244750  T
Q  111 acatttgatcaannnnnnnnnnnatttccccgtgctggcacgggtcagtgtactag 166  Q
    ||||||||||||           |||||||||||||||||||||||| | ||||||    
T  6244749 acatttgatcaaaaaagttttttatttccccgtgctggcacgggtcactatactag 6244694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 31920412 - 31920324
Alignment:
Q  1 aattaataaaagtataataatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaagatgatatt 89  Q
    ||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31920412 aattagtacaagtataataatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaagatgatatt 31920324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 1 - 166
Target Start/End: Original strand, 49788106 - 49788277
Alignment:
Q  1 aattaataaaagtataataatccaaatatttt-tatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaagatgata-----ttcatat 94  Q
    ||||| || ||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||| |||||||||     |||||||    
T  49788106 aattagtacaagtataataatccaaatattttttatcgttatatgcaatgtttagatattttaaaatatatacaaaatgaagatgatatttttttcatat 49788205  T
Q  95 cgaatttaaaatctacacatttgatcaannnnnnnnnnnatttccccgtgctggcacgggtcagtgtactag 166  Q
    ||||||||||||||| |||||| |||||           |||||||||||||||||||||||| | ||||||    
T  49788206 cgaatttaaaatctatacatttaatcaaaaaagttttttatttccccgtgctggcacgggtcactatactag 49788277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 109
Target Start/End: Complemental strand, 35854849 - 35854737
Alignment:
Q  1 aattaataaaagtataataatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaagatgata-----ttcatatc 95  Q
    ||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||     ||||||||    
T  35854849 aattagtacaagtataataatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatata-aaaattaagatgatatttttttcatatc 35854751  T
Q  96 gaatttaaaatcta 109  Q
    ||||||||||||||    
T  35854750 gaatttaaaatcta 35854737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 12 - 89
Target Start/End: Complemental strand, 49709108 - 49709031
Alignment:
Q  12 gtataataatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaagatgatatt 89  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| || |||||    
T  49709108 gtataataatccaaatatttttatcgttatatgcaatgtttagatattttaaaatatatacaaaattaaaattatatt 49709031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 786858 - 786772
Alignment:
Q  1 aattaataaaagtataataatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaagatgatatt 89  Q
    ||||| || ||||||||||||||||||| ||||||||||||  |||||||||||||||||||||||||||||||| |||||||||||||    
T  786858 aattagtacaagtataataatccaaatacttttatcgttat--gcaatgtttagatatttcaaaatatatacaaagttaagatgatatt 786772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 19 - 89
Target Start/End: Original strand, 618608 - 618678
Alignment:
Q  19 aatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaagatgatatt 89  Q
    |||||||||| ||| |||||||| |||||||||||||||||| ||||||||||||||||||||||||||||    
T  618608 aatccaaatactttaatcgttatgtgcaatgtttagatattttaaaatatatacaaaattaagatgatatt 618678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 19 - 80
Target Start/End: Original strand, 37532700 - 37532761
Alignment:
Q  19 aatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaa 80  Q
    |||||||||| ||| |||||||| ||||||||||||||||||||||||||||||||||||||    
T  37532700 aatccaaatactttaatcgttatgtgcaatgtttagatatttcaaaatatatacaaaattaa 37532761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 38517497 - 38517436
Alignment:
Q  1 aattaataaaagtataataatccaaatatttttatcgttatatgcaatgtttagatatttca 62  Q
    ||||| || ||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  38517497 aattagtacaagtataataatccagatatttttatcgttatatgcaatgtttagatatttca 38517436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 1859619 - 1859565
Alignment:
Q  1 aattaataaaagtataataatccaaatatttttatcgttatatgcaatgtttaga 55  Q
    ||||| || |||||||||||||||||||||||||||||||||| |||| ||||||    
T  1859619 aattagtacaagtataataatccaaatatttttatcgttatatacaatatttaga 1859565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 88 - 122
Target Start/End: Complemental strand, 38517439 - 38517405
Alignment:
Q  88 ttcatatcgaatttaaaatctacacatttgatcaa 122  Q
    |||||||||||||||||||||| ||||||||||||    
T  38517439 ttcatatcgaatttaaaatctatacatttgatcaa 38517405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 95; Significance: 1e-46; HSPs: 22)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 1 - 122
Target Start/End: Complemental strand, 10108921 - 10108795
Alignment:
Q  1 aattaataaaagtataataatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaagatgata-----ttcatatc 95  Q
    ||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     ||||||||    
T  10108921 aattagtacaagtataataatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaagatgatatttttttcatatc 10108822  T
Q  96 gaatttaaaatctacacatttgatcaa 122  Q
    |||||||||||||| ||||||||||||    
T  10108821 gaatttaaaatctatacatttgatcaa 10108795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 1 - 157
Target Start/End: Complemental strand, 10230160 - 10229999
Alignment:
Q  1 aattaataaaagtataataatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaagatgata-----ttcatatc 95  Q
    ||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     ||||||||    
T  10230160 aattagtacaagtataataatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaagatgatatttttttcatatc 10230061  T
Q  96 gaatttaaaatctacacatttgatcaannnnnnnnnnnatttccccgtgctggcacgggtca 157  Q
    ||||||||||||||  |||||||||||           ||||||||||||||||||||||||    
T  10230060 gaatttaaaatctatccatttgatcaaaaaagttttttatttccccgtgctggcacgggtca 10229999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 1 - 157
Target Start/End: Complemental strand, 10233755 - 10233594
Alignment:
Q  1 aattaataaaagtataataatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaagatgata-----ttcatatc 95  Q
    ||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||     ||||||||    
T  10233755 aattattacaagtataataatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaagataatatttttttcatatc 10233656  T
Q  96 gaatttaaaatctacacatttgatcaannnnnnnnnnnatttccccgtgctggcacgggtca 157  Q
    |||||||||||||| ||||||||||||           ||||||||||||||||||||||||    
T  10233655 gaatttaaaatctatacatttgatcaaaaaagttttttatttccccgtgctggcacgggtca 10233594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 1 - 122
Target Start/End: Complemental strand, 27273347 - 27273221
Alignment:
Q  1 aattaataaaagtataataatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaagatgata-----ttcatatc 95  Q
    ||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||     ||||||||    
T  27273347 aattagtacaagtataataatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatataaaattaagatgatatttttttcatatc 27273248  T
Q  96 gaatttaaaatctacacatttgatcaa 122  Q
    |||||||||||||| ||||||||||||    
T  27273247 gaatttaaaatctatacatttgatcaa 27273221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 1 - 122
Target Start/End: Complemental strand, 31753 - 31628
Alignment:
Q  1 aattaataaaagtataataatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaagatgata-----ttcatatc 95  Q
    ||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||     ||||||||    
T  31753 aattagtacaagtataataatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaatt-agatgatatttttttcatatc 31655  T
Q  96 gaatttaaaatctacacatttgatcaa 122  Q
    |||||||||||||| ||||||||||||    
T  31654 gaatttaaaatctatacatttgatcaa 31628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 41764644 - 41764752
Alignment:
Q  1 aattaataaaagtataataatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaagatgatatt-----catatc 95  Q
    ||||| || ||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||     ||||||    
T  41764644 aattagtacaagtataataatccaaatacttttatcgttatatacaatgtttagatatttcaaaatatatacaaaattaagatgatatttttttcatatc 41764743  T
Q  96 gaatttaaa 104  Q
    |||||||||    
T  41764744 gaatttaaa 41764752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 10037585 - 10037497
Alignment:
Q  1 aattaataaaagtataataatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaagatgatatt 89  Q
    ||||| || ||||||| ||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  10037585 aattagtacaagtatagtaatccaaatacttttatcgttatatgcaatgtttggatatttcaaaatatatacaaaattaagatgatatt 10037497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 15329844 - 15329932
Alignment:
Q  1 aattaataaaagtataataatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaagatgatatt 89  Q
    ||||| || |||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  15329844 aattagtacaagtataacaatccaaatacttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaagattatatt 15329932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 23092485 - 23092377
Alignment:
Q  1 aattaataaaagtataataatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaagatgata-----ttcatatc 95  Q
    ||||| || ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||| |||     ||||||||    
T  23092485 aattagtacaagtataataatccaaatatttttatcgttatatgcagtgtttagatatttcaaaatatatacaaaaataagattatatatttttcatatc 23092386  T
Q  96 gaatttaaa 104  Q
    |||||||||    
T  23092385 gaatttaaa 23092377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 13 - 89
Target Start/End: Complemental strand, 11361187 - 11361111
Alignment:
Q  13 tataataatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaagatgatatt 89  Q
    |||||||||||||||| |||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  11361187 tataataatccaaatacttttatggttatatgcaatgtttagatatttcaaattatatacaaaattaagatgatatt 11361111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 11367588 - 11367500
Alignment:
Q  1 aattaataaaagtataataatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaagatgatatt 89  Q
    ||||| || ||||||||||||||||||| ||| |||| ||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  11367588 aattagtacaagtataataatccaaataatttaatcgatatatgcaaagtttagatatttcaaaatatatacaaaattaagatgatatt 11367500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 19 - 89
Target Start/End: Complemental strand, 9999343 - 9999273
Alignment:
Q  19 aatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaagatgatatt 89  Q
    |||||||||| ||| |||| ||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  9999343 aatccaaatactttaatcgctatgtgcaatgtttagatatttcaaaatatatacaaaattaagatgatatt 9999273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 19 - 89
Target Start/End: Complemental strand, 10234355 - 10234285
Alignment:
Q  19 aatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaagatgatatt 89  Q
    |||||||||| ||| |||| ||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  10234355 aatccaaatactttaatcgctatgtgcaatgtttagatatttcaaaatatatacaaaattaagatgatatt 10234285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 19 - 89
Target Start/End: Original strand, 37803048 - 37803118
Alignment:
Q  19 aatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaagatgatatt 89  Q
    |||||||||| ||| |||||||| |||||||||||||||| ||||||||||||||||||||||||||||||    
T  37803048 aatccaaatactttaatcgttatgtgcaatgtttagatatctcaaaatatatacaaaattaagatgatatt 37803118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 47691977 - 47691892
Alignment:
Q  1 aattaataaaagtataataatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaagatgatat 88  Q
    |||||||| ||||||||  || |||||| ||| |||||||| |||||||||||||||||||||| |||||||||||||||||||||||    
T  47691977 aattaatataagtataa--attcaaatactttaatcgttatgtgcaatgtttagatatttcaaattatatacaaaattaagatgatat 47691892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 19 - 89
Target Start/End: Complemental strand, 10230762 - 10230693
Alignment:
Q  19 aatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaagatgatatt 89  Q
    |||||||||| ||| |||| ||| ||||| |||||||||||||||||||||||||||||||||||||||||    
T  10230762 aatccaaatactttaatcgctatgtgcaa-gtttagatatttcaaaatatatacaaaattaagatgatatt 10230693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 19 - 89
Target Start/End: Complemental strand, 10041000 - 10040928
Alignment:
Q  19 aatccaaatatttttatcgttatatgcaatgtttaga--tatttcaaaatatatacaaaattaagatgatatt 89  Q
    |||||||||| ||| ||| |||| |||||||||||||  ||||||||||||||||||||||||||||||||||    
T  10041000 aatccaaatactttaatccttatgtgcaatgtttagacatatttcaaaatatatacaaaattaagatgatatt 10040928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 19 - 80
Target Start/End: Complemental strand, 10109533 - 10109472
Alignment:
Q  19 aatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaa 80  Q
    |||||||||| ||| |||| ||| ||||||||||||||||||||||||||||||||||||||    
T  10109533 aatccaaatactttaatcgctatgtgcaatgtttagatatttcaaaatatatacaaaattaa 10109472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 21 - 77
Target Start/End: Original strand, 10970196 - 10970252
Alignment:
Q  21 tccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaat 77  Q
    |||||||| ||| |||||| | |||||||||||||||||||||||||||||||||||    
T  10970196 tccaaatactttaatcgttgtgtgcaatgtttagatatttcaaaatatatacaaaat 10970252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 19 - 80
Target Start/End: Complemental strand, 41221131 - 41221070
Alignment:
Q  19 aatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaa 80  Q
    |||||||||| ||| ||  |||| |||||||||||| |||||||||||||||||||||||||    
T  41221131 aatccaaatactttaatatttatgtgcaatgtttaggtatttcaaaatatatacaaaattaa 41221070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 23 - 80
Target Start/End: Complemental strand, 50409090 - 50409033
Alignment:
Q  23 caaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaa 80  Q
    |||||| ||| |||||||| ||||||||||| |||||||||||||||||||| |||||    
T  50409090 caaatactttaatcgttatgtgcaatgtttatatatttcaaaatatatacaatattaa 50409033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 175 - 205
Target Start/End: Complemental strand, 24677092 - 24677062
Alignment:
Q  175 tcaaggttcaaacaccaacccattccaacaa 205  Q
    |||||||||||||||||||||||||||||||    
T  24677092 tcaaggttcaaacaccaacccattccaacaa 24677062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0550 (Bit Score: 94; Significance: 6e-46; HSPs: 1)
Name: scaffold0550
Description:

Target: scaffold0550; HSP #1
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 1 - 166
Target Start/End: Original strand, 4806 - 4976
Alignment:
Q  1 aattaataaaagtataataatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaagatgata-----ttcatatc 95  Q
    ||||| || ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||     ||||||||    
T  4806 aattagtacaagtataataatccaaatatttttatcgttatatgcaatgttttgatatttcaaaatatatacaaaattaagatgatatttttttcatatc 4905  T
Q  96 gaatttaaaatctacacatttgatcaannnnnnnnnnnatttccccgtgctggcacgggtcagtgtactag 166  Q
    |||||||||||||| ||||||||||||           |||||||||||||||||||||||| | ||||||    
T  4906 gaatttaaaatctatacatttgatcaaaaaagttttttatttccccgtgctggcacgggtcactatactag 4976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 94; Significance: 6e-46; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 1 - 166
Target Start/End: Complemental strand, 42231097 - 42230927
Alignment:
Q  1 aattaataaaagtataataatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaagatgata-----ttcatatc 95  Q
    ||||| || ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     ||||||||    
T  42231097 aattagtacaagtataataatccaaatacttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaagatgatatttttttcatatc 42230998  T
Q  96 gaatttaaaatctacacatttgatcaannnnnnnnnnnatttccccgtgctggcacgggtcagtgtactag 166  Q
    |||||||||||||| ||||||||||||           |||||||||||||||||||||||| | ||||||    
T  42230997 gaatttaaaatctatacatttgatcaaaaaagttttttatttccccgtgctggcacgggtcactatactag 42230927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 5 - 122
Target Start/End: Original strand, 12787264 - 12787386
Alignment:
Q  5 aataaaagtataataatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaagatgata-----ttcatatcgaat 99  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     |||||||| |||    
T  12787264 aatacaagtataataatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaagatgatatttttttcatatcaaat 12787363  T
Q  100 ttaaaatctacacatttgatcaa 122  Q
    |||||||||| ||||||||||||    
T  12787364 ttaaaatctatacatttgatcaa 12787386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 1 - 119
Target Start/End: Complemental strand, 7035647 - 7035524
Alignment:
Q  1 aattaataaaagtataataatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaagatgata-----ttcatatc 95  Q
    ||||| || ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||     ||||||||    
T  7035647 aattagtacaagtataataatccaaatatttttatcgttatatgaaatgtttagatatttcaaaatatatacaaaattaagatgatatttttttcatatc 7035548  T
Q  96 gaatttaaaatctacacatttgat 119  Q
    |||||||||||||| |||||||||    
T  7035547 gaatttaaaatctatacatttgat 7035524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 109
Target Start/End: Original strand, 9002399 - 9002514
Alignment:
Q  1 aattaataaaagtataataatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaagatgata-------ttcata 93  Q
    ||||| || |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||    
T  9002399 aattagtacaagtataataattcaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaagatgatatatttttttcata 9002498  T
Q  94 tcgaatttaaaatcta 109  Q
    ||||||||||||||||    
T  9002499 tcgaatttaaaatcta 9002514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 45122630 - 45122737
Alignment:
Q  1 aattaataaaagtataataatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaagatgata----ttcatatcg 96  Q
    ||||| || |||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    |||||||||    
T  45122630 aattagtacaagtataataattcaaatacttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaagatgatattttttcatatcg 45122729  T
Q  97 aatttaaa 104  Q
    ||||||||    
T  45122730 aatttaaa 45122737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 21071330 - 21071419
Alignment:
Q  1 aattaataaaagtataataa-tccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaagatgatatt 89  Q
    ||||| || ||||||||||| |||||||| ||| |||||| | | |||||||||||||||||||||||||||||||||||||||||||||    
T  21071330 aattagtataagtataataaatccaaatactttaatcgttgtgtacaatgtttagatatttcaaaatatatacaaaattaagatgatatt 21071419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 19 - 80
Target Start/End: Original strand, 5829829 - 5829890
Alignment:
Q  19 aatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaa 80  Q
    |||| ||||| ||| |||||||| |||||||||||||||||||||||||| |||||||||||    
T  5829829 aatcaaaatactttaatcgttatgtgcaatgtttagatatttcaaaatatttacaaaattaa 5829890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 19 - 80
Target Start/End: Complemental strand, 22843464 - 22843403
Alignment:
Q  19 aatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaa 80  Q
    |||||||||| |||  ||||||| ||||||||||||||||||  ||||||||||||||||||    
T  22843464 aatccaaatactttagtcgttatgtgcaatgtttagatatttttaaatatatacaaaattaa 22843403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 94; Significance: 6e-46; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 1 - 166
Target Start/End: Original strand, 31512769 - 31512939
Alignment:
Q  1 aattaataaaagtataataatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaagatgata-----ttcatatc 95  Q
    ||||| || |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||     ||||||||    
T  31512769 aattagtacaagtataataatccaaatatttttatcgttatatgcaacgtttagatatttcaaaatatatacaaaattaagatgatatttttttcatatc 31512868  T
Q  96 gaatttaaaatctacacatttgatcaannnnnnnnnnnatttccccgtgctggcacgggtcagtgtactag 166  Q
    |||||||||||||| ||||||||||||           |||||||||||||||||||||||| | ||||||    
T  31512869 gaatttaaaatctatacatttgatcaaaaaagttttttatttccccgtgctggcacgggtcactatactag 31512939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 1 - 166
Target Start/End: Original strand, 29642631 - 29642801
Alignment:
Q  1 aattaataaaagtataataatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaagatgata-----ttcatatc 95  Q
    ||||| || |||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||| |||     ||||||||    
T  29642631 aattagtacaagtataataatccaaatatttttatcgttgtatgcaacgtttagatatttcaaaatatatacaaaattaagatcatatttttttcatatc 29642730  T
Q  96 gaatttaaaatctacacatttgatcaannnnnnnnnnnatttccccgtgctggcacgggtcagtgtactag 166  Q
    |||||||||||||| ||||||||||||           |||||||||||||||||||||||| | ||||||    
T  29642731 gaatttaaaatctatacatttgatcaaaaaagttttttatttccccgtgctggcacgggtcactatactag 29642801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 12516330 - 12516242
Alignment:
Q  1 aattaataaaagtataataatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaagatgatatt 89  Q
    ||||| || ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12516330 aattagtacaagtataataatccaaatacttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaagatgatatt 12516242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 24195844 - 24195756
Alignment:
Q  1 aattaataaaagtataataatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaagatgatatt 89  Q
    |||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  24195844 aattaatacaagtataataatcaaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaagattatatt 24195756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 15330481 - 15330393
Alignment:
Q  1 aattaataaaagtataataatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaagatgatatt 89  Q
    ||||| || ||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  15330481 aattagtacaagtataataatccaaatacttttatcgttatatgcaatgtttaaatatttcaaaatatatacaaaattaagatgatatt 15330393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 19 - 80
Target Start/End: Complemental strand, 10186478 - 10186417
Alignment:
Q  19 aatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaa 80  Q
    |||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||    
T  10186478 aatccaaatattttaatcgttatgtgcaatgtttagatatttcaaaatatatacaaaattaa 10186417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 12518556 - 12518470
Alignment:
Q  1 aattaataaaagtataataatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaagatgatatt 89  Q
    |||||||| ||||||||  ||||||||| ||| |||||||| |||||||||||||||||||||||| |||||||||||| |||||||||    
T  12518556 aattaatataagtataa--atccaaatactttgatcgttatgtgcaatgtttagatatttcaaaatttatacaaaattaggatgatatt 12518470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 23 - 80
Target Start/End: Original strand, 4221304 - 4221361
Alignment:
Q  23 caaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaa 80  Q
    |||||| ||| |||||||| ||||||||||||||||||||||||||||||||||||||    
T  4221304 caaatactttaatcgttatgtgcaatgtttagatatttcaaaatatatacaaaattaa 4221361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 19 - 80
Target Start/End: Complemental strand, 30880988 - 30880927
Alignment:
Q  19 aatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaa 80  Q
    |||||||||| ||| |||||||||||||||||||||||||||  ||||||||||||||||||    
T  30880988 aatccaaatactttaatcgttatatgcaatgtttagatatttttaaatatatacaaaattaa 30880927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 20 - 89
Target Start/End: Complemental strand, 14906422 - 14906353
Alignment:
Q  20 atccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaagatgatatt 89  Q
    ||||||||| ||| ||| |||| |||||| ||||||||||||||||||| |||| |||||||| ||||||    
T  14906422 atccaaatactttaatcattatgtgcaatatttagatatttcaaaatatttacagaattaagaagatatt 14906353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0090 (Bit Score: 91; Significance: 4e-44; HSPs: 1)
Name: scaffold0090
Description:

Target: scaffold0090; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 50217 - 50343
Alignment:
Q  1 aattaataaaagtataataatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaagatgata-----ttcatatc 95  Q
    ||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||     ||||||||    
T  50217 aattagtacaagtataataatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaataaagatgatatttttttcatatc 50316  T
Q  96 gaatttaaaatctacacatttgatcaa 122  Q
    |||||||||||||| ||||||||||||    
T  50317 gaatttaaaatctatacatttgatcaa 50343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 91; Significance: 4e-44; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 1 - 122
Target Start/End: Complemental strand, 36518881 - 36518755
Alignment:
Q  1 aattaataaaagtataataatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaagatgata-----ttcatatc 95  Q
    ||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||     ||||||||    
T  36518881 aattagtacaagtataataatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaaaatgatatttttttcatatc 36518782  T
Q  96 gaatttaaaatctacacatttgatcaa 122  Q
    |||||||||||||| ||||||||||||    
T  36518781 gaatttaaaatctatacatttgatcaa 36518755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 1 - 122
Target Start/End: Complemental strand, 52499674 - 52499548
Alignment:
Q  1 aattaataaaagtataataatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaagatgata-----ttcatatc 95  Q
    ||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     ||||||||    
T  52499674 aattagtacaagtataataatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaagatgatatttttttcatatc 52499575  T
Q  96 gaatttaaaatctacacatttgatcaa 122  Q
    |||||||||||||| |||||| |||||    
T  52499574 gaatttaaaatctatacatttaatcaa 52499548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 13 - 166
Target Start/End: Original strand, 6312281 - 6312439
Alignment:
Q  13 tataataatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaagatga-----tattcatatcgaatttaaaatc 107  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||     | ||||||||||||||||||||    
T  6312281 tataataatccaaatatttttatcgttatatgcaatgtttagatattttaaaatatatacaaaattatgatgatttttttttcatatcgaatttaaaatc 6312380  T
Q  108 tacacatttgatcaannnnnnnnnnnatttccccgtgctggcacgggtcagtgtactag 166  Q
    || ||||||||||||           |||||||||||||||||||||||| | ||||||    
T  6312381 tatacatttgatcaaaaaagttttttatttccccgtgctggcacgggtcactatactag 6312439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 166
Target Start/End: Complemental strand, 18147631 - 18147461
Alignment:
Q  1 aattaataaaagtataataatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaagatgata-----ttcatatc 95  Q
    ||||| || |||||||||||||||||||||||||||| ||| ||||||| |||||||||||||||||||||||||||||||||||||     ||||||||    
T  18147631 aattagtacaagtataataatccaaatatttttatcgctatgtgcaatgcttagatatttcaaaatatatacaaaattaagatgatatttttttcatatc 18147532  T
Q  96 gaatttaaaatctacacatttgatcaannnnnnnnnnnatttccccgtgctggcacgggtcagtgtactag 166  Q
    |||||||||||||| | |||| |||||           |||||||||||||||||||||||| | ||||||    
T  18147531 gaatttaaaatctatatatttaatcaaaaaagttttttatttccccgtgctggcacgggtcactatactag 18147461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 109
Target Start/End: Original strand, 37391422 - 37391534
Alignment:
Q  1 aattaataaaagtataataatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaagatgata-----ttcatatc 95  Q
    ||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||     ||||||||    
T  37391422 aattagtacaagtataataatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatata-aaaattaagatgatatttttttcatatc 37391520  T
Q  96 gaatttaaaatcta 109  Q
    ||||||||||||||    
T  37391521 gaatttaaaatcta 37391534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 25075132 - 25075220
Alignment:
Q  1 aattaataaaagtataataatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaagatgatatt 89  Q
    ||||| || ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25075132 aattagtacaagtataataatccaaatacttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaagatgatatt 25075220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 16040967 - 16040879
Alignment:
Q  1 aattaataaaagtataataatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaagatgatatt 89  Q
    ||||| || ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  16040967 aattagtacaagtataataatccatatatttttatcgttatatgcaatgtttagatatttcaaaatatatataaaattaagatgatatt 16040879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 16748942 - 16749030
Alignment:
Q  1 aattaataaaagtataataatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaagatgatatt 89  Q
    ||||| || |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| || |||||    
T  16748942 aattagtacaagtataataatccaaatatttttatcgttatattcaatgtttagatatttcaaaatatatacaaaattaaaattatatt 16749030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 48776604 - 48776712
Alignment:
Q  1 aattaataaaagtataataatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaagatgatatt-----catatc 95  Q
    |||||||| |||||||||||  |||||| ||| |||| |||||||||||||||||||||||||||||||||||||||||| ||||||||     ||||||    
T  48776604 aattaatacaagtataataaaacaaatactttaatcgatatatgcaatgtttagatatttcaaaatatatacaaaattaaaatgatatttttttcatatc 48776703  T
Q  96 gaatttaaa 104  Q
    |||||||||    
T  48776704 gaatttaaa 48776712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 19 - 89
Target Start/End: Complemental strand, 28960998 - 28960928
Alignment:
Q  19 aatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaagatgatatt 89  Q
    |||||||||| ||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  28960998 aatccaaatactttaatcgttatttgcaatgtttagatatttcaaaatatatacaaaattaagatgatatt 28960928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 48240067 - 48240153
Alignment:
Q  1 aattaataaaagtataataatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaagatgatatt 89  Q
    |||||||| ||||||||  ||||||||| ||| |||||||| ||||||||||| |||||||||||||||||||||||||||||||||||    
T  48240067 aattaatataagtataa--atccaaatagtttaatcgttatgtgcaatgtttatatatttcaaaatatatacaaaattaagatgatatt 48240153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 19 - 89
Target Start/End: Complemental strand, 7101895 - 7101825
Alignment:
Q  19 aatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaagatgatatt 89  Q
    |||||||||| ||| |||||||| |||||||||||||||||||||| ||||||||||||||||||||||||    
T  7101895 aatccaaatactttaatcgttatgtgcaatgtttagatatttcaaattatatacaaaattaagatgatatt 7101825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 19 - 86
Target Start/End: Original strand, 2454046 - 2454113
Alignment:
Q  19 aatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaagatgat 86  Q
    |||||||||| ||| |||||||| ||||||||||| ||||||||||||||||||||||||||||||||    
T  2454046 aatccaaatactttaatcgttatgtgcaatgtttaaatatttcaaaatatatacaaaattaagatgat 2454113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 19 - 89
Target Start/End: Complemental strand, 36206143 - 36206073
Alignment:
Q  19 aatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaagatgatatt 89  Q
    |||| ||||| ||| ||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  36206143 aatctaaatactttaatcattatatgcaatgtttagatatttcaaaatatatacaaaattaaaatgatatt 36206073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 19 - 89
Target Start/End: Complemental strand, 16043289 - 16043219
Alignment:
Q  19 aatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaagatgatatt 89  Q
    |||||||||| ||| |||||||| ||||||| ||| ||||||||||||||| |||||||||||||||||||    
T  16043289 aatccaaatactttgatcgttatgtgcaatggttacatatttcaaaatatagacaaaattaagatgatatt 16043219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 46 - 80
Target Start/End: Complemental strand, 12450875 - 12450841
Alignment:
Q  46 aatgtttagatatttcaaaatatatacaaaattaa 80  Q
    |||||||||||||||||||||||||||||||||||    
T  12450875 aatgtttagatatttcaaaatatatacaaaattaa 12450841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0582 (Bit Score: 90; Significance: 1e-43; HSPs: 1)
Name: scaffold0582
Description:

Target: scaffold0582; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 1 - 166
Target Start/End: Complemental strand, 10362 - 10192
Alignment:
Q  1 aattaataaaagtataataatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaagatgata-----ttcatatc 95  Q
    ||||| || |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||     || |||||    
T  10362 aattagtacaagtataataatccaaatatttttatcgttatatgcaacgtttagatatttcaaaatatatacaaaattaagatgatattttttttatatc 10263  T
Q  96 gaatttaaaatctacacatttgatcaannnnnnnnnnnatttccccgtgctggcacgggtcagtgtactag 166  Q
    |||||||||||||| ||||||||||||           |||||||||||||||||||||||| | ||||||    
T  10262 gaatttaaaatctatacatttgatcaaaaaagttttttatttccccgtgctggcacgggtcactatactag 10192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0472 (Bit Score: 87; Significance: 9e-42; HSPs: 1)
Name: scaffold0472
Description:

Target: scaffold0472; HSP #1
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 1 - 122
Target Start/End: Complemental strand, 13406 - 13280
Alignment:
Q  1 aattaataaaagtataataatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaagatgata-----ttcatatc 95  Q
    ||||| || ||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     ||||||||    
T  13406 aattagtacaagtataataatttaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaagatgatatttttttcatatc 13307  T
Q  96 gaatttaaaatctacacatttgatcaa 122  Q
    |||||||||||||| ||||||||||||    
T  13306 gaatttaaaatctatacatttgatcaa 13280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0118 (Bit Score: 79; Significance: 5e-37; HSPs: 1)
Name: scaffold0118
Description:

Target: scaffold0118; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 1 - 166
Target Start/End: Original strand, 29843 - 30016
Alignment:
Q  1 aattaataaaagtataataatccaaatatttttatcgttat---atgcaatgtttagatatttcaaaatatatacaaaattaagatgata-----ttcat 92  Q
    ||||| || ||||||||||||||||||||||||||| ||||   |||||||||||||||||||||||||||||||||||||||||| |||     |||||    
T  29843 aattagtacaagtataataatccaaatatttttatcattattatatgcaatgtttagatatttcaaaatatatacaaaattaagataatatttttttcat 29942  T
Q  93 atcgaatttaaaatctacacatttgatcaannnnnnnnnnnatttccccgtgctggcacgggtcagtgtactag 166  Q
    ||||||||||||||||| ||||||||||||           |||||||||||||||||||||||| | ||||||    
T  29943 atcgaatttaaaatctatacatttgatcaaaaaagttttttatttccccgtgctggcacgggtcactatactag 30016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029 (Bit Score: 76; Significance: 3e-35; HSPs: 1)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 133144 - 133231
Alignment:
Q  1 aattaataaaagtataataatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaagatgatat 88  Q
    ||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  133144 aattagtacaagtataataatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaagattatat 133231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0499 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: scaffold0499
Description:

Target: scaffold0499; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 10088 - 10000
Alignment:
Q  1 aattaataaaagtataataatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaagatgatatt 89  Q
    ||||| || ||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10088 aattagtacaagtataataatccaaatactttcatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaagatgatatt 10000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0073 (Bit Score: 73; Significance: 2e-33; HSPs: 2)
Name: scaffold0073
Description:

Target: scaffold0073; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 23536 - 23448
Alignment:
Q  1 aattaataaaagtataataatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaagatgatatt 89  Q
    ||||| || ||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  23536 aattagtacaagtataataatccaaatacttttatcgttatatgcaatgtttatatatttcaaaatatatacaaaattaagatgatatt 23448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0073; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 18401 - 18313
Alignment:
Q  1 aattaataaaagtataataatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaagatgatatt 89  Q
    ||||| || ||||||||||||||||||| ||| ||||||||||||||||||||| |||||  ||||||||||||||||||||| |||||    
T  18401 aattagtacaagtataataatccaaatactttgatcgttatatgcaatgtttagctattttgaaatatatacaaaattaagattatatt 18313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 12 - 88
Target Start/End: Original strand, 310983 - 311059
Alignment:
Q  12 gtataataatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaagatgatat 88  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  310983 gtataataatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaagattatat 311059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 69; Significance: 5e-31; HSPs: 2)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 164469 - 164381
Alignment:
Q  1 aattaataaaagtataataatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaagatgatatt 89  Q
    ||||| || ||||||||||||||||||| ||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||    
T  164469 aattagtacaagtataataatccaaatacttttatcgttatatgcaatgtttagatattttaaattatatacaaaattaagatgatatt 164381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 172584 - 172496
Alignment:
Q  1 aattaataaaagtataataatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaagatgatatt 89  Q
    ||||| || ||||||||||||||||||| ||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||    
T  172584 aattagtacaagtataataatccaaatacttttatcgttatatgcaatgtttagatattttaaattatatacaaaattaagatgatatt 172496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0888 (Bit Score: 59; Significance: 5e-25; HSPs: 1)
Name: scaffold0888
Description:

Target: scaffold0888; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 19 - 89
Target Start/End: Original strand, 1019 - 1089
Alignment:
Q  19 aatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaagatgatatt 89  Q
    |||||||||| ||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  1019 aatccaaatactttaatcgttatgtgcaatgtttagatatttcaaaatatatacaaaattaagatgatatt 1089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0025 (Bit Score: 59; Significance: 5e-25; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 19 - 89
Target Start/End: Complemental strand, 13419 - 13349
Alignment:
Q  19 aatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaagatgatatt 89  Q
    |||||||||||||| |||||||  |||||||||||||||||||||||||||||||||||||||||||||||    
T  13419 aatccaaatattttaatcgttacgtgcaatgtttagatatttcaaaatatatacaaaattaagatgatatt 13349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0262 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: scaffold0262
Description:

Target: scaffold0262; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 17954 - 17865
Alignment:
Q  1 aattaataaaagtataataa-tccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaagatgatatt 89  Q
    ||||| || ||||||||||| |||||||| ||| |||||||| ||||||||||| |||||||||||||||||||||||||||||||||||    
T  17954 aattagtataagtataataaatccaaatactttaatcgttatgtgcaatgtttaaatatttcaaaatatatacaaaattaagatgatatt 17865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 19 - 80
Target Start/End: Original strand, 98113 - 98174
Alignment:
Q  19 aatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaa 80  Q
    |||||||||| ||| |||||||| ||||||||||||||||||||||||||||||||||||||    
T  98113 aatccaaatactttaatcgttatgtgcaatgtttagatatttcaaaatatatacaaaattaa 98174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0134 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: scaffold0134
Description:

Target: scaffold0134; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 80
Target Start/End: Original strand, 6508 - 6588
Alignment:
Q  1 aattaataaaagtataataa-tccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaa 80  Q
    ||||| || ||||||||||| |||||||| ||| |||||||| ||||||||||||||||||||||||||||| ||||||||    
T  6508 aattagtataagtataataaatccaaatactttaatcgttatgtgcaatgtttagatatttcaaaatatatataaaattaa 6588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1370 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: scaffold1370
Description:

Target: scaffold1370; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 19 - 89
Target Start/End: Original strand, 1462 - 1534
Alignment:
Q  19 aatccaaatatttttatcgttatatgcaatgtttagatat--ttcaaaatatatacaaaattaagatgatatt 89  Q
    |||||||||| ||| ||| |||| ||||||||||||||||  |||||||||||||||||||||||||||||||    
T  1462 aatccaaatactttaatctttatgtgcaatgtttagatatatttcaaaatatatacaaaattaagatgatatt 1534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0532 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: scaffold0532
Description:

Target: scaffold0532; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 19 - 80
Target Start/End: Original strand, 3610 - 3671
Alignment:
Q  19 aatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaa 80  Q
    |||||||| | ||| |||||||| ||||||||||||||||||||||||||||||||||||||    
T  3610 aatccaaagactttaatcgttatgtgcaatgtttagatatttcaaaatatatacaaaattaa 3671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0107 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: scaffold0107
Description:

Target: scaffold0107; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 19 - 89
Target Start/End: Complemental strand, 44933 - 44861
Alignment:
Q  19 aatccaaatatttttatcgttatatgcaatgtttagatat--ttcaaaatatatacaaaattaagatgatatt 89  Q
    |||||||||| ||| ||| |||| ||||||||||||||||  |||||||||||||||||||||||||||||||    
T  44933 aatccaaatactttaatctttatgtgcaatgtttagatatatttcaaaatatatacaaaattaagatgatatt 44861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1424 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold1424
Description:

Target: scaffold1424; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 80
Target Start/End: Complemental strand, 631 - 551
Alignment:
Q  1 aattaataaaagtataataa-tccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaa 80  Q
    ||||| || ||||||||||| | |||||| ||  |||||||| ||||||||||||||||||||||||||||||||||||||    
T  631 aattagtataagtataataaattcaaatacttcaatcgttatgtgcaatgtttagatatttcaaaatatatacaaaattaa 551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 80
Target Start/End: Complemental strand, 185512 - 185432
Alignment:
Q  1 aattaataaaagtataataa-tccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaa 80  Q
    ||||| || ||||||||||| | |||||| ||| |||||||| |||||||||||||||||| |||||||||||||||||||    
T  185512 aattagtataagtataataaatacaaatactttaatcgttatgtgcaatgtttagatattttaaaatatatacaaaattaa 185432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 19 - 80
Target Start/End: Complemental strand, 125152 - 125091
Alignment:
Q  19 aatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaa 80  Q
    |||||||||| ||| |||| ||| ||||||||||||||||| ||||||||||||||||||||    
T  125152 aatccaaatactttaatcgctatgtgcaatgtttagatattgcaaaatatatacaaaattaa 125091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University