View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1696_high_29 (Length: 268)

Name: NF1696_high_29
Description: NF1696
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1696_high_29
NF1696_high_29
[»] chr1 (1 HSPs)
chr1 (16-268)||(1716680-1716932)
[»] chr3 (12 HSPs)
chr3 (16-154)||(26646593-26646731)
chr3 (172-268)||(19837841-19837937)
chr3 (16-160)||(24840371-24840515)
chr3 (172-265)||(19818017-19818110)
chr3 (180-268)||(19955529-19955617)
chr3 (16-141)||(26651629-26651754)
chr3 (173-268)||(19811740-19811835)
chr3 (16-82)||(19853167-19853233)
chr3 (28-149)||(19818145-19818266)
chr3 (16-86)||(19989173-19989243)
chr3 (96-162)||(20045698-20045764)
chr3 (98-151)||(19950707-19950760)
[»] chr7 (1 HSPs)
chr7 (176-266)||(12581235-12581325)
[»] chr5 (1 HSPs)
chr5 (195-268)||(26355512-26355585)


Alignment Details
Target: chr1 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 16 - 268
Target Start/End: Complemental strand, 1716932 - 1716680
Alignment:
Q  16 caaagatgccaactttcttccacactgtttcatgtttgagtttaagttcatcaacccacttatcccattttgagttttgttggcgccaccaattgaaatg 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  1716932 caaagatgccaactttcttccacactgtttcatgtttgagtttaagttcatcaacccacttatcccattttgagttttgttggcgccacccattgaaatg 1716833  T
Q  116 gattttaaaaggccactcatttggttcagaaacaaaagatgatgaaatctttgaaagtggttcatcaatagagtttgctatgggtttgagaaaatgggct 215  Q
    |||||| |||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||    
T  1716832 gattttcaaaggccaatcatttggttcagaaacaaaagatgatgaaatctttgaaggtggttcatcaatagagtttgctgtgggtttgagaaaatgggct 1716733  T
Q  216 gttctgaatgttggttcattctcacaaccaggtgaaagcatgaaatcttccct 268  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1716732 gttctgaatgttggttcattctcacaaccaggtgaaagcatgaaatcttccct 1716680  T

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Target: chr3 (Bit Score: 51; Significance: 3e-20; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 16 - 154
Target Start/End: Complemental strand, 26646731 - 26646593
Alignment:
Q  16 caaagatgccaactttcttccacactgtttcatgtttgagtttaagttcatcaacccacttatcccattttgagttttgttggcgccaccaattgaaatg 115  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||  || ||||||| | |  | |  | ||||| | | |||| |     
T  26646731 caaagatgccaactttcttccacactgtttcatatttgagtttaagttgatcaacccatctaacccatttggcgcgtgggcgacgccaaccagtgaagtt 26646632  T
Q  116 gattttaaaaggccactcatttggttcagaaacaaaaga 154  Q
    |||||| ||||||||||| ||||||||| ||||| ||||    
T  26646631 gattttcaaaggccactcctttggttcaaaaacagaaga 26646593  T

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Target: chr3; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 172 - 268
Target Start/End: Complemental strand, 19837937 - 19837841
Alignment:
Q  172 gtggttcatcaatagagtttgctatgggtttgagaaaatgggctgttctgaatgttggttcattctcacaaccaggtgaaagcatgaaatcttccct 268  Q
    ||||||| ||||| |||||||| || ||||| ||||||||||| ||||||| ||||| |||| | |||| | || ||||||||||||||||||||||    
T  19837937 gtggttcttcaatggagtttgcaataggtttaagaaaatgggcagttctgagtgttgcttcactatcaccagcaagtgaaagcatgaaatcttccct 19837841  T

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Target: chr3; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 16 - 160
Target Start/End: Original strand, 24840371 - 24840515
Alignment:
Q  16 caaagatgccaactttcttccacactgtttcatgtttgagtttaagttcatcaacccacttatcccattttgagttttgttggcgccaccaattgaaatg 115  Q
    ||||||||| | |||| |||||||| | ||||| |||||| | |||||||||||||||||||  ||||||    | | | | | |||||| |||||||||    
T  24840371 caaagatgcaagcttttttccacaccgattcatatttgagctgaagttcatcaacccacttaatccatttctcatgtgggtagtgccacccattgaaatg 24840470  T
Q  116 gattttaaaaggccactcatttggttcagaaacaaaagatgatga 160  Q
    |||||| ||||||||||| |||| |||||||||| || |||||||    
T  24840471 gattttcaaaggccactcctttgcttcagaaacagaacatgatga 24840515  T

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Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 172 - 265
Target Start/End: Complemental strand, 19818110 - 19818017
Alignment:
Q  172 gtggttcatcaatagagtttgctatgggtttgagaaaatgggctgttctgaatgttggttcattctcacaaccaggtgaaagcatgaaatcttc 265  Q
    ||||||||||||| |||||||| |  || ||||||||||| || ||||||| |||||| ||| | |||| | ||||||||||||||||||||||    
T  19818110 gtggttcatcaatggagtttgcaacaggcttgagaaaatgagcagttctgagtgttggatcactgtcaccagcaggtgaaagcatgaaatcttc 19818017  T

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Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 180 - 268
Target Start/End: Complemental strand, 19955617 - 19955529
Alignment:
Q  180 tcaatagagtttgctatgggtttgagaaaatgggctgttctgaatgttggttcattctcacaaccaggtgaaagcatgaaatcttccct 268  Q
    ||||| |||||||  |||||||| ||||||||||||||||||| |||||| ||| | |||| | | |||||||||||||| ||||||||    
T  19955617 tcaatggagtttgaaatgggtttaagaaaatgggctgttctgagtgttggatcactatcaccagctggtgaaagcatgaactcttccct 19955529  T

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Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 16 - 141
Target Start/End: Complemental strand, 26651754 - 26651629
Alignment:
Q  16 caaagatgccaactttcttccacactgtttcatgtttgagtttaagttcatcaacccacttatcccattttgagttttgttggcgccaccaattgaaatg 115  Q
    ||||||||||  |||| |||||||||| |||||  ||| | ||||||| ||||||||||||| ||||||| | || | | |  |||||||| |||||| |    
T  26651754 caaagatgccggcttttttccacactgattcatacttgggcttaagttgatcaacccacttaacccatttcgtgtgtgggtaacgccaccagttgaaacg 26651655  T
Q  116 gattttaaaaggccactcatttggtt 141  Q
    |||||| |||||||| || |||||||    
T  26651654 gattttcaaaggccattcctttggtt 26651629  T

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Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 173 - 268
Target Start/End: Complemental strand, 19811835 - 19811740
Alignment:
Q  173 tggttcatcaatagagtttgctatgggtttgagaaaatgggctgttctgaatgttggttcattctcacaaccaggtgaaagcatgaaatcttccct 268  Q
    |||||||| ||| |||||||  |||||||| |||||||| || |||||||| ||||  ||| | |||| |  ||||||||||||||||||||||||    
T  19811835 tggttcatgaatggagtttgaaatgggtttaagaaaatgagcagttctgaaagttgaatcactgtcaccagaaggtgaaagcatgaaatcttccct 19811740  T

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Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 16 - 82
Target Start/End: Complemental strand, 19853233 - 19853167
Alignment:
Q  16 caaagatgccaactttcttccacactgtttcatgtttgagtttaagttcatcaacccacttatccca 82  Q
    ||||||| |||||||||||||| | || ||||| |||||||| ||||| ||||||||||||| ||||    
T  19853233 caaagattccaactttcttccatagtgattcatatttgagttgaagttgatcaacccacttaaccca 19853167  T

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Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 28 - 149
Target Start/End: Complemental strand, 19818266 - 19818145
Alignment:
Q  28 ctttcttccacactgtttcatgtttgagtttaagttcatcaacccacttatcccattttgagttttgttggcgccaccaattgaaatggattttaaaagg 127  Q
    ||||||||||||| | |||||  ||  |||||||||||||||||||  ||  ||||||    | |||||||||||| | ||||||||| ||||| |||||    
T  19818266 ctttcttccacacagattcatactttggtttaagttcatcaacccaactaaaccatttctcttgttgttggcgccatccattgaaatgtattttcaaagg 19818167  T
Q  128 ccactcatttggttcagaaaca 149  Q
     ||||||||||| ||| |||||    
T  19818166 acactcatttggatcaaaaaca 19818145  T

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Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 86
Target Start/End: Complemental strand, 19989243 - 19989173
Alignment:
Q  16 caaagatgccaactttcttccacactgtttcatgtttgagtttaagttcatcaacccacttatcccatttt 86  Q
    |||||||||||||||||||||||||   ||||  |||| ||||||||| ||||||||| | | ||||||||    
T  19989243 caaagatgccaactttcttccacacatattcaaatttgggtttaagttgatcaacccaataaacccatttt 19989173  T

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Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 96 - 162
Target Start/End: Complemental strand, 20045764 - 20045698
Alignment:
Q  96 tggcgccaccaattgaaatggattttaaaaggccactcatttggttcagaaacaaaagatgatgaaa 162  Q
    |||||||||| | |||| | |||||| |||||||| || ||||||||| || |||||||||||||||    
T  20045764 tggcgccacccagtgaagttgattttcaaaggccattcctttggttcaaaatcaaaagatgatgaaa 20045698  T

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Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 98 - 151
Target Start/End: Complemental strand, 19950760 - 19950707
Alignment:
Q  98 gcgccaccaattgaaatggattttaaaaggccactcatttggttcagaaacaaa 151  Q
    |||||||| ||||||||||||||| |||||  |||||| ||||||| |||||||    
T  19950760 gcgccacccattgaaatggattttcaaagggtactcatctggttcaaaaacaaa 19950707  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 176 - 266
Target Start/End: Original strand, 12581235 - 12581325
Alignment:
Q  176 ttcatcaatagagtttgctatgggtttgagaaaatgggctgttctgaatgttggttcattctcacaaccaggtgaaagcatgaaatcttcc 266  Q
    ||||||||| || ||||| || |||||||| |||||||||||| | |  ||||||||| | |||| | ||| |||||||||||||| ||||    
T  12581235 ttcatcaatggaatttgcaataggtttgagtaaatgggctgttttaagagttggttcactatcaccaacagttgaaagcatgaaattttcc 12581325  T

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Target: chr5 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 195 - 268
Target Start/End: Original strand, 26355512 - 26355585
Alignment:
Q  195 atgggtttgagaaaatgggctgttctgaatgttggttcattctcacaaccaggtgaaagcatgaaatcttccct 268  Q
    |||||||| |||||||||||| ||||||| |||| |||| | | || | | ||||| |||||||||||||||||    
T  26355512 atgggttttagaaaatgggctattctgaaagttgcttcactgtgaccatctggtgagagcatgaaatcttccct 26355585  T

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