View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1696_high_32 (Length: 254)
Name: NF1696_high_32
Description: NF1696
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1696_high_32 |
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Alignment Details
Target: chr1 (Bit Score: 212; Significance: 1e-116; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 9 - 236
Target Start/End: Complemental strand, 44946 - 44719
Alignment:
| Q |
9 |
agcagagatcattacagccaccacaagagcatgtgcaatagccacaaaaaacaatcccactaaggcatctccacttagtttatctattgaaataaatttc |
108 |
Q |
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| T |
44946 |
agcagagatcattacagccaccacaagagcatgtgcaatagccacaaaaaacaaacccactaaggcatctccacttagcttatctattgaaataaatttc |
44847 |
T |
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| Q |
109 |
aaggaattagtcttagatccatactttctccaaaagattaatttaactgactctagaccaaatacatttgatttataagaccccttttctttatatttca |
208 |
Q |
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| T |
44846 |
aaggaattagtcttagatccatactttctccaaaagattaatttaactgactctagaccaaatacatttgatttataagaccccttttctttatatttca |
44747 |
T |
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| Q |
209 |
ttatgaatattcttaatagccagagttt |
236 |
Q |
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|||||||| |||||| |||||||||||| |
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| T |
44746 |
ttatgaatgttcttagtagccagagttt |
44719 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 10 - 107
Target Start/End: Complemental strand, 47020 - 46923
Alignment:
| Q |
10 |
gcagagatcattacagccaccacaagagcatgtgcaatagccacaaaaaacaatcccactaaggcatctccacttagtttatctattgaaataaattt |
107 |
Q |
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||||| |||||||| ||||||| |||| ||| ||| |||||||||||||| ||||||||||| ||||||||||||| ||||||| |||||||||||| |
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| T |
47020 |
gcagatatcattaccgccaccagaagaacatttgccatagccacaaaaaataatcccactaaaccatctccacttagcttatctaatgaaataaattt |
46923 |
T |
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