View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1696_high_38 (Length: 241)
Name: NF1696_high_38
Description: NF1696
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1696_high_38 |
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Alignment Details
Target: chr4 (Bit Score: 164; Significance: 9e-88; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 40 - 220
Target Start/End: Complemental strand, 56098114 - 56097930
Alignment:
| Q |
40 |
catgcattcgtcactctaaatacgcatttcaaagatacaacagaacaattgcgtgtttgaatacacatagtattttgggagagatcaatttcttaaatga |
139 |
Q |
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| T |
56098114 |
catgcattcgtcactctaaatacgcatttcaaagatacaacagaacaattgcgtgtttgaatacacatagtattttgggagagatcaatttcttaaatga |
56098015 |
T |
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| Q |
140 |
cact----gtggttatgttaaactctctctaattagtccaaaaacacatcaagggacaatattcaaacttaagttatatgggaaa |
220 |
Q |
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|||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
56098014 |
cactgtacgtggttatgttaaactctctctaattagtccaaaaatacatcaagggacaatattcaaacttaagttatatgggaaa |
56097930 |
T |
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