View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1696_high_39 (Length: 240)
Name: NF1696_high_39
Description: NF1696
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1696_high_39 |
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| [»] scaffold0534 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 205; Significance: 1e-112; HSPs: 9)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 12 - 224
Target Start/End: Complemental strand, 36396671 - 36396459
Alignment:
| Q |
12 |
gcaaatgttttagatttagaaacaagaagttcaccatctcttaaggttttgtcaatagatatggtatcagaagaacaagagcaaaaagagaatgtgagaa |
111 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36396671 |
gcaaatgttttagatttagaaacaagaagttcaccatctcttaaggttttgtcaatagatatggtatcagaagaacaagagcaaaaagagaatgtgagaa |
36396572 |
T |
|
| Q |
112 |
gtagtagaatcaaagagttaagaagtaaattattatgcatcactgacaacttttgtttataattttgggacgtaacaaagtagagatgatttgtagcaca |
211 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| | |
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| T |
36396571 |
gtagtagaatcaaagagttaagaagtaaattattatgcatcactgacaacttttgtttataattttgggatgtaacaaagtagagatgatttgtagcaga |
36396472 |
T |
|
| Q |
212 |
gtccattgagttc |
224 |
Q |
| |
|
||||||||||||| |
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|
| T |
36396471 |
gtccattgagttc |
36396459 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 12 - 225
Target Start/End: Complemental strand, 36386888 - 36386675
Alignment:
| Q |
12 |
gcaaatgttttagatttagaaacaagaagttcaccatctcttaaggttttgtcaatagatatggtatcagaagaacaagagcaaaaagagaatgtgagaa |
111 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||| | || ||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36386888 |
gcaaatgttttagatttagaaacaagaagttcaccatctctcaggggtttgtgaatagatatggtatcagaagaacaagagcaaaaagagaatgtgagaa |
36386789 |
T |
|
| Q |
112 |
gtagtagaatcaaagagttaagaagtaaattattatgcatcactgacaacttttgtttataattttgggacgtaacaaagtagagatgatttgtagcaca |
211 |
Q |
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| || ||||||||||||||||||||| ||||||||||||||||||||||||| ||||||| ||||| || ||||||||||||||| ||||||||||||| |
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| T |
36386788 |
ggagcagaatcaaagagttaagaagtgaattattatgcatcactgacaacttgtgtttatgattttaggttgtaacaaagtagagaagatttgtagcaca |
36386689 |
T |
|
| Q |
212 |
gtccattgagttct |
225 |
Q |
| |
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|||||||||||||| |
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| T |
36386688 |
gtccattgagttct |
36386675 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 12 - 115
Target Start/End: Complemental strand, 36403604 - 36403501
Alignment:
| Q |
12 |
gcaaatgttttagatttagaaacaagaagttcaccatctcttaaggttttgtcaatagatatggtatcagaagaacaagagcaaaaagagaatgtgagaa |
111 |
Q |
| |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
36403604 |
gcaaaggttttagatttagaaacaagaagttcaccatctcttaaggttttgtcgatagatatggtatcagaagaacaagagcaaaaagagaatgtgagga |
36403505 |
T |
|
| Q |
112 |
gtag |
115 |
Q |
| |
|
|||| |
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|
| T |
36403504 |
gtag |
36403501 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 12 - 129
Target Start/End: Complemental strand, 36410921 - 36410804
Alignment:
| Q |
12 |
gcaaatgttttagatttagaaacaagaagttcaccatctcttaaggttttgtcaatagatatggtatcagaagaacaagagcaaaaagagaatgtgagaa |
111 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||| || ||||| ||||| |||||||||||||||||||| ||||||||| || |||||| |
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| T |
36410921 |
gcaaatgttttagatttagaaatgagaagttcaccatctcttatgggtttgtgaatagttatggtatcagaagaacaagggcaaaaagataaggtgagac |
36410822 |
T |
|
| Q |
112 |
gtagtagaatcaaagagt |
129 |
Q |
| |
|
||||||||||||||||| |
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| T |
36410821 |
atagtagaatcaaagagt |
36410804 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 12 - 129
Target Start/End: Complemental strand, 36416252 - 36416135
Alignment:
| Q |
12 |
gcaaatgttttagatttagaaacaagaagttcaccatctcttaaggttttgtcaatagatatggtatcagaagaacaagagcaaaaagagaatgtgagaa |
111 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||| || ||||| ||||| |||||||||||||||||||| ||||||||| || |||||| |
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| T |
36416252 |
gcaaatgttttagatttagaaatgagaagttcaccatctcttatgggtttgtgaatagttatggtatcagaagaacaagggcaaaaagataaggtgagac |
36416153 |
T |
|
| Q |
112 |
gtagtagaatcaaagagt |
129 |
Q |
| |
|
||||||||||||||||| |
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|
| T |
36416152 |
atagtagaatcaaagagt |
36416135 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 12 - 129
Target Start/End: Complemental strand, 36425087 - 36424970
Alignment:
| Q |
12 |
gcaaatgttttagatttagaaacaagaagttcaccatctcttaaggttttgtcaatagatatggtatcagaagaacaagagcaaaaagagaatgtgagaa |
111 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||| || ||||| ||||| |||||||||||||||||||| ||||||||| || |||||| |
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| T |
36425087 |
gcaaatgttttagatttagaaatgagaagttcaccatctcttatgggtttgtgaatagttatggtatcagaagaacaagggcaaaaagataaggtgagac |
36424988 |
T |
|
| Q |
112 |
gtagtagaatcaaagagt |
129 |
Q |
| |
|
||||||||||||||||| |
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|
| T |
36424987 |
atagtagaatcaaagagt |
36424970 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 19 - 128
Target Start/End: Complemental strand, 36432937 - 36432831
Alignment:
| Q |
19 |
ttttagatttagaaacaagaagttcaccatctcttaaggttttgtcaatagatatggtatcagaagaacaagagcaaaaagagaatgtgagaagtagtag |
118 |
Q |
| |
|
||||||||||||||| ||||| |||||||||||||| | |||| || ||||||| ||||||||||||||||||||||||||| |||||||||||||| |
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| T |
36432937 |
ttttagatttagaaatcagaagctcaccatctcttaatggtttgacagtagatatagtatcagaagaacaagagcaaaaagag---gtgagaagtagtag |
36432841 |
T |
|
| Q |
119 |
aatcaaagag |
128 |
Q |
| |
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|||||||||| |
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|
| T |
36432840 |
aatcaaagag |
36432831 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 12 - 130
Target Start/End: Complemental strand, 36372932 - 36372814
Alignment:
| Q |
12 |
gcaaatgttttagatttagaaacaagaagttcaccatctcttaaggttttgtcaatagatatggtatcagaagaacaagagcaaaaagagaatgtgagaa |
111 |
Q |
| |
|
||||| ||||| ||||| ||||||||||| ||||||||||||| | ||||||| |||||||| |||||| ||||||||||||||| ||||| || ||| |
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|
| T |
36372932 |
gcaaaagttttggatttggaaacaagaagctcaccatctcttattggtttgtcagtagatatgatatcagtagaacaagagcaaaaggagaaggtcggaa |
36372833 |
T |
|
| Q |
112 |
gtagtagaatcaaagagtt |
130 |
Q |
| |
|
| ||||||||||||||||| |
|
|
| T |
36372832 |
ggagtagaatcaaagagtt |
36372814 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 12 - 146
Target Start/End: Complemental strand, 36368316 - 36368182
Alignment:
| Q |
12 |
gcaaatgttttagatttagaaacaagaagttcaccatctcttaaggttttgtcaatagatatggtatcagaagaacaagagcaaaaagagaatgtgagaa |
111 |
Q |
| |
|
|||||||||||||||||||| | ||||| ||||||||||||| | | | ||| ||||||| ||||||||||||| || |||||||| || | |||| |
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|
| T |
36368316 |
gcaaatgttttagatttagatataagaatctcaccatctcttatgcgtgtatcagaagatatgatatcagaagaacaggaacaaaaagaaaaggcaagaa |
36368217 |
T |
|
| Q |
112 |
gtagtagaatcaaagagttaagaagtaaattatta |
146 |
Q |
| |
|
| |||||||||||| | ||||| || |||||||| |
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|
| T |
36368216 |
ggagtagaatcaaataattaagtagccaattatta |
36368182 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0534 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: scaffold0534
Description:
Target: scaffold0534; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 65 - 131
Target Start/End: Original strand, 11045 - 11111
Alignment:
| Q |
65 |
aatagatatggtatcagaagaacaagagcaaaaagagaatgtgagaagtagtagaatcaaagagtta |
131 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
11045 |
aatagatatggtatcagaagaacaagagcaaaaagagaagctgagaagtagtagaatcaaagagtta |
11111 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 65 - 131
Target Start/End: Complemental strand, 42772681 - 42772615
Alignment:
| Q |
65 |
aatagatatggtatcagaagaacaagagcaaaaagagaatgtgagaagtagtagaatcaaagagtta |
131 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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|
| T |
42772681 |
aatagatatggtatcagaagaacaagagcaaaaagagaagctgagaagtagtagaatcaaagagtta |
42772615 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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