View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1696_high_45 (Length: 228)
Name: NF1696_high_45
Description: NF1696
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1696_high_45 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 9 - 228
Target Start/End: Original strand, 49928109 - 49928328
Alignment:
| Q |
9 |
cgctaaaccccctttgtttctgaaaaccaacaaaacaaaaccacattcactatttgtattgtaataacccgtgttcatattttgtctttcactttcacat |
108 |
Q |
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| T |
49928109 |
cgctaaaccccctttgtttctgaaaaccaacaaaacaaaaccacattcactatttgtattgtaataacccgtgttcatattttgtctttcactttcacat |
49928208 |
T |
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| Q |
109 |
tctcataatcatatcagaactctaaaatgggacaagaatcagattccaaagccaagttggtgttagaaatttgctccatttctacacgttctgcatcttg |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49928209 |
tctcataatcatatcagaactctaaaatgggacaagaatcagattccaaagccaagttggtgttagaaatttgctccatttctacacgttctgcatcttg |
49928308 |
T |
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| Q |
209 |
tgttcataggattccaacca |
228 |
Q |
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|||||||||||||||||||| |
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| T |
49928309 |
tgttcataggattccaacca |
49928328 |
T |
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