View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1696_high_48 (Length: 219)
Name: NF1696_high_48
Description: NF1696
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1696_high_48 |
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| [»] chr7 (4 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 98; Significance: 2e-48; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 122 - 219
Target Start/End: Complemental strand, 34462741 - 34462644
Alignment:
| Q |
122 |
atttataagacacacttgatgctattaatgtgaaaaaatagacatggctaaaaatagcaaaaacccgagtcattagtacatttgagtgagctagagtt |
219 |
Q |
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| T |
34462741 |
atttataagacacacttgatgctattaatgtgaaaaaatagacatggctaaaaatagcaaaaacccgagtcattagtacatttgagtgagctagagtt |
34462644 |
T |
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Target: chr7; HSP #2
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 34462862 - 34462780
Alignment:
| Q |
1 |
atgacactccaattaggtagagccaaagaaaactggaacaagcttttgaaaaagtcatttgtataagcaaaccctttaacttc |
83 |
Q |
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| T |
34462862 |
atgacactataattaggtagagccagagaaaactgcaacatgcttttgaaaaagtcatttgtataagcaaaccctttaacttc |
34462780 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 122 - 205
Target Start/End: Complemental strand, 34445934 - 34445846
Alignment:
| Q |
122 |
atttataagacacacttgatgctattaatgtgaaaaaatagaca----tggctaaaaat-agcaaaaacccgagtcattagtacatttg |
205 |
Q |
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| T |
34445934 |
atttataagacacactttgtgctattaatgtcaaaaaatagataaatgtgactaaaaataagcaaagacccgagtcattagcacatttg |
34445846 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 122 - 205
Target Start/End: Complemental strand, 34435082 - 34434994
Alignment:
| Q |
122 |
atttataagacacacttgatgctattaatgtgaaaaaatagaca----tggctaaaaat-agcaaaaacccgagtcattagtacatttg |
205 |
Q |
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| T |
34435082 |
atttataagacacactttgtgctattaatgtcaaaaaatagataaatgtgactaaaaataagcgaagacccgagtcattagcacatttg |
34434994 |
T |
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