View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1696_high_50 (Length: 215)
Name: NF1696_high_50
Description: NF1696
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1696_high_50 |
 | |
|
| [»] chr7 (4 HSPs) |
| |
|
| [»] chr4 (2 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 194; Significance: 1e-105; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 6 - 215
Target Start/End: Original strand, 6987461 - 6987670
Alignment:
| Q |
6 |
gtcgaagaaaatgcaatatccatggataaaatagcttccacaatcatatcttctaatttctggcctccaattcaggtctgctgatatagtgattttattg |
105 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||| |
|
|
| T |
6987461 |
gtcgaagacaatgcaatatccatggataaaatagcttccacaatcatatcttctaatttctggcctccaattcaggtctgcagatatagtgatttaattg |
6987560 |
T |
|
| Q |
106 |
atcattttttgaatttcagatgatgtgaaaaaattgatgtatttatgttatgttttaattgatagttctcactactcagcctgaatattatacttaagtt |
205 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
6987561 |
atcattttttgaatttcagatgatgtgaaaaaattgatgtatttatgttatgttttaattgatagttctcactactcagcctgaatattataattaagtt |
6987660 |
T |
|
| Q |
206 |
cattaatatc |
215 |
Q |
| |
|
|||||||||| |
|
|
| T |
6987661 |
cattaatatc |
6987670 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 51 - 215
Target Start/End: Original strand, 7009474 - 7009646
Alignment:
| Q |
51 |
atatcttctaatttctggcctccaattcaggtctgctgatatagtgattttattga--------tcattttttgaatttcagatgatgtgaaaaaattga |
142 |
Q |
| |
|
|||||||||||||| |||||||||||||| |||||| |||| | |||||||||| |||||||||||||||||||| |||||||||||||| |
|
|
| T |
7009474 |
atatcttctaatttttggcctccaattcatgtctgcagataagattattttattgatcatttgatcattttttgaatttcagatattgtgaaaaaattga |
7009573 |
T |
|
| Q |
143 |
tgtatttatgttatgttttaattgatagttctcactactcagcctgaatattatacttaagttcattaatatc |
215 |
Q |
| |
|
|||||||||||||||||| || | | |||||||||||||| ||| ||||||||||||||||||||||||||| |
|
|
| T |
7009574 |
tgtatttatgttatgtttcaaatttttgttctcactactcatccttaatattatacttaagttcattaatatc |
7009646 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 51 - 215
Target Start/End: Original strand, 7024832 - 7025004
Alignment:
| Q |
51 |
atatcttctaatttctggcctccaattcaggtctgctgatatagtgattttattga--------tcattttttgaatttcagatgatgtgaaaaaattga |
142 |
Q |
| |
|
|||||||||||||| |||||||||||||| |||||| |||| | |||||||||| |||||||||||||||||||| |||||||||||||| |
|
|
| T |
7024832 |
atatcttctaatttttggcctccaattcatgtctgcagataagattattttattgatcatttgatcattttttgaatttcagatattgtgaaaaaattga |
7024931 |
T |
|
| Q |
143 |
tgtatttatgttatgttttaattgatagttctcactactcagcctgaatattatacttaagttcattaatatc |
215 |
Q |
| |
|
|||||||||||||||||| || | | |||||||||||||| ||| ||||||||||||||||||||||||||| |
|
|
| T |
7024932 |
tgtatttatgttatgtttcaaatttttgttctcactactcatccttaatattatacttaagttcattaatatc |
7025004 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 51 - 215
Target Start/End: Original strand, 7055356 - 7055528
Alignment:
| Q |
51 |
atatcttctaatttctggcctccaattcaggtctgctgatatagtgattttattga--------tcattttttgaatttcagatgatgtgaaaaaattga |
142 |
Q |
| |
|
|||||||||||||| |||||||||||||| |||||| |||| | |||||||||| |||||||||||||||||||| |||||||||||||| |
|
|
| T |
7055356 |
atatcttctaatttttggcctccaattcatgtctgcagataagattattttattgatcatttgatcattttttgaatttcagatattgtgaaaaaattga |
7055455 |
T |
|
| Q |
143 |
tgtatttatgttatgttttaattgatagttctcactactcagcctgaatattatacttaagttcattaatatc |
215 |
Q |
| |
|
|||||||||||||||||| || | | |||||||||||||| ||| ||||||||||||||||||||||||||| |
|
|
| T |
7055456 |
tgtatttatgttatgtttcaaatttttgttctcactactcatccttaatattatacttaagttcattaatatc |
7055528 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 92; Significance: 7e-45; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 92; E-Value: 7e-45
Query Start/End: Original strand, 9 - 215
Target Start/End: Complemental strand, 31961819 - 31961613
Alignment:
| Q |
9 |
gaagaaaatgcaatatccatggataaaatagcttccacaatcatatcttctaatttctggcctccaattcaggtctgctgatatagtgattttattgatc |
108 |
Q |
| |
|
||||| |||||||| |||||||||||| |||| |||| |||||||||||||||||||||||||| || ||||||||| |||| | | ||||||||||| |
|
|
| T |
31961819 |
gaagacaatgcaatttccatggataaagtagccgccactatcatatcttctaatttctggcctccgatacaggtctgcagataaaattattttattgatg |
31961720 |
T |
|
| Q |
109 |
attttttgaatttcagatgatgtgaaaaa-attgatgtatttatgttatgttttaattgatagttctcactactcagcctgaatattatacttaagttca |
207 |
Q |
| |
|
||||||| | |||||||| |||||||||| |||||| ||||||||||||| || || | |||||||||||||| ||||| | ||| |||||||| ||||| |
|
|
| T |
31961719 |
atttttt-attttcagataatgtgaaaaagattgatatatttatgttatgattcaagttatagttctcactacccagcccgtataatatacttaggttca |
31961621 |
T |
|
| Q |
208 |
ttaatatc |
215 |
Q |
| |
|
|||||||| |
|
|
| T |
31961620 |
ttaatatc |
31961613 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 9 - 215
Target Start/End: Complemental strand, 31898025 - 31897819
Alignment:
| Q |
9 |
gaagaaaatgcaatatccatggataaaatagcttccacaatcatatcttctaatttctggcctccaattcaggtctgctgatatagtgattttattgatc |
108 |
Q |
| |
|
||||| |||||||| |||||||||||| |||| |||| |||||||||||||||||||||||||| || |||||||| ||||| | | ||||||||||| |
|
|
| T |
31898025 |
gaagacaatgcaatttccatggataaagtagccgccactatcatatcttctaatttctggcctccgatacaggtctgttgataaaattattttattgata |
31897926 |
T |
|
| Q |
109 |
attttttgaatttcagatgatgtgaaaaa-attgatgtatttatgttatgttttaattgatagttctcactactcagcctgaatattatacttaagttca |
207 |
Q |
| |
|
||||||| | |||||||| |||||||||| ||| || ||||||||||||| || || | |||||||||||||| ||||| | ||| |||||||| ||||| |
|
|
| T |
31897925 |
atttttt-attttcagataatgtgaaaaagattaatatatttatgttatgattcaagttatagttctcactacccagcccgtataatatacttaggttca |
31897827 |
T |
|
| Q |
208 |
ttaatatc |
215 |
Q |
| |
|
|||||||| |
|
|
| T |
31897826 |
ttaatatc |
31897819 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University