View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1696_high_52 (Length: 210)
Name: NF1696_high_52
Description: NF1696
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1696_high_52 |
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Alignment Details
Target: chr7 (Bit Score: 182; Significance: 1e-98; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 182; E-Value: 1e-98
Query Start/End: Original strand, 15 - 196
Target Start/End: Complemental strand, 32935140 - 32934959
Alignment:
| Q |
15 |
aaaagaattagaagaaaacctatgaacatagaggtcatattgctttcccttgagtacaagcttctttatatatggatcctctccatctgcaacttttgga |
114 |
Q |
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| T |
32935140 |
aaaagaattagaagaaaacctatgaacatagaggtcatattgctttcccttgagtacaagcttctttatatatggatcctctccatctgcaacttttgga |
32935041 |
T |
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| Q |
115 |
gcatttttagctgttttctttgacacagcatatgtcatttgaactgaaccacctccaaggtcaattactcccactgtttttg |
196 |
Q |
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| T |
32935040 |
gcatttttagctgttttctttgacacagcatatgtcatttgaactgaaccacctccaaggtcaattactcccactgtttttg |
32934959 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 19 - 196
Target Start/End: Complemental strand, 32912029 - 32911852
Alignment:
| Q |
19 |
gaattagaagaaaacctatgaacatagaggtcatattgctttcccttgagtacaagcttctttatatatggatcctctccatctgcaacttttggagcat |
118 |
Q |
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| T |
32912029 |
gaattagaaggaaacctgtgaacatagagatcatatggttttcccttgagtacaagcttcttaatgtatggatcaactccatcagcaacttttggagcat |
32911930 |
T |
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| Q |
119 |
ttttagctgttttctttgacacagcatatgtcatttgaactgaaccacctccaaggtcaattactcccactgtttttg |
196 |
Q |
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| T |
32911929 |
ttttagctgttttctttgacactgcatatgccatttgaactgatccacctccaagatccattactcccactgtttttg |
32911852 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 111; E-Value: 3e-56
Query Start/End: Original strand, 30 - 196
Target Start/End: Complemental strand, 32924018 - 32923852
Alignment:
| Q |
30 |
aaacctatgaacatagaggtcatattgctttcccttgagtacaagcttctttatatatggatcctctccatctgcaacttttggagcatttttagctgtt |
129 |
Q |
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| T |
32924018 |
aaacctatgaacatagagatcatatttttttcccttgagtacaagcttcttaatgtatggatcttctccatcagcaacttttggagcatttttagctgta |
32923919 |
T |
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| Q |
130 |
ttctttgacacagcatatgtcatttgaactgaaccacctccaaggtcaattactcccactgtttttg |
196 |
Q |
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| T |
32923918 |
tactttgacactgcatatgccatttgaactgatccacctccaagatccattactcccactgtttttg |
32923852 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 17 - 191
Target Start/End: Complemental strand, 32942696 - 32942522
Alignment:
| Q |
17 |
aagaattagaagaaaacctatgaacatagaggtcatattgctttcccttgagtacaagcttctttatatatggatcctctccatctgcaacttttggagc |
116 |
Q |
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|||||| |||| ||||||| ||||||||||||| ||||| |||||| || ||||||| ||| ||||| |||||||||||||| | | |||| |||||| |
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| T |
32942696 |
aagaataagaataaaacctgtgaacatagaggtaatatttctttcctttaagtacaatcttttttatgtatggatcctctccctgaggtacttgtggagc |
32942597 |
T |
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| Q |
117 |
atttttagc-tgttttctttgacacagcatatgtcatttgaactgaaccacctccaaggtcaattactcccactgt |
191 |
Q |
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| T |
32942596 |
tttttttgcttgttctc-ttgagactgcatataccatttgaactgatccccctccaagatcagctactgccactgt |
32942522 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 17 - 98
Target Start/End: Complemental strand, 32948815 - 32948734
Alignment:
| Q |
17 |
aagaattagaagaaaacctatgaacatagaggtcatattgctttcccttgagtacaagcttctttatatatggatcctctcc |
98 |
Q |
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| T |
32948815 |
aagaataagaataaaacctgtgaacatagaggtaatatttctttcctttaagtacaatcttttttatgtatggatcctctcc |
32948734 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 104; Significance: 5e-52; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 30 - 196
Target Start/End: Complemental strand, 11824158 - 11823991
Alignment:
| Q |
30 |
aaacctatgaacatagaggtcatattgcttt-cccttgagtacaagcttctttatatatggatcctctccatctgcaacttttggagcatttttagctgt |
128 |
Q |
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|||||||||||||||||| ||||||| ||| |||||||||||||||||||| ||||||||||| |||||||| |||||||||||||||||||||||||| |
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| T |
11824158 |
aaacctatgaacatagagatcatattttttttcccttgagtacaagcttcttaatatatggatcatctccatcagcaacttttggagcatttttagctgt |
11824059 |
T |
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| Q |
129 |
tttctttgacacagcatatgtcatttgaactgaaccacctccaaggtcaattactcccactgtttttg |
196 |
Q |
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| T |
11824058 |
attccttgacactgcatatgccatttgaaccgatccacctccaagatccattactcccactgtttttg |
11823991 |
T |
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