View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1696_low_10 (Length: 387)
Name: NF1696_low_10
Description: NF1696
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1696_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 277; Significance: 1e-155; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 36 - 372
Target Start/End: Original strand, 55984394 - 55984745
Alignment:
| Q |
36 |
tattaagtcatagaacaagcaacgactacgttagtatgttaaatgatgtacttttattgttcaattataaatgtattagatgcagatagcaacatgatgg |
135 |
Q |
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| T |
55984394 |
tattaagtcatagaacaagcaacgactacgttagtatgttaaatgatgtacttttattgttcaattataaatgtattagatgcagatagcaacatgatag |
55984493 |
T |
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| Q |
136 |
tttctcatagaacagggtataataaatattgcacaatcataaattgcgtaaaaatgaaattagtttactagcatatacaacggaaaaacactaacaaaat |
235 |
Q |
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| T |
55984494 |
tttctcatagagcagggtataataaatattgcacaatcataaactgcgtaaaaatgaaattagtttactagcatatacaacggaaaaacactaacaaaat |
55984593 |
T |
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| Q |
236 |
tttggaagaaac----------tagcagcaatctagagaaaaggaaatttgtaaaagaaaaaacatcatcataactgtgt-----agcacgagttagtgt |
320 |
Q |
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| T |
55984594 |
tttggaagaaactagcagaatatagcagcaatctagagaaagggaaatttgtaaaagaaaaaacatcttcataactgtgtattaaagcacgagttagtgt |
55984693 |
T |
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| Q |
321 |
attaaagcaattaaaaaacatcattataaatgtatcaatgttatgcaatata |
372 |
Q |
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| T |
55984694 |
attaaagcaattaaaaaacatcattataaatgtatcaatgttatgcaatata |
55984745 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 182; E-Value: 3e-98
Query Start/End: Original strand, 36 - 229
Target Start/End: Complemental strand, 55968542 - 55968349
Alignment:
| Q |
36 |
tattaagtcatagaacaagcaacgactacgttagtatgttaaatgatgtacttttattgttcaattataaatgtattagatgcagatagcaacatgatgg |
135 |
Q |
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| T |
55968542 |
tattaagtcatagaacaagcaacgactacgttagtatgttaaatgatgtacttttattgttcaattataaatgtattagatgcagatagcaacatgatag |
55968443 |
T |
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| Q |
136 |
tttctcatagaacagggtataataaatattgcacaatcataaattgcgtaaaaatgaaattagtttactagcatatacaacggaaaaacactaa |
229 |
Q |
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| T |
55968442 |
tttctcatagagcagggtataataaatattgcacaatcataaactgcgtaaaaatgaaattagtttactagcatatacaacggaaaaacactaa |
55968349 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 153 - 185
Target Start/End: Complemental strand, 55968893 - 55968861
Alignment:
| Q |
153 |
tataataaatattgcacaatcataaattgcgta |
185 |
Q |
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| T |
55968893 |
tataataaatattgcacaatcataaattgcgta |
55968861 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 153 - 185
Target Start/End: Original strand, 55984043 - 55984075
Alignment:
| Q |
153 |
tataataaatattgcacaatcataaattgcgta |
185 |
Q |
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| T |
55984043 |
tataataaatattgcacaatcataaattgcgta |
55984075 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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