View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1696_low_13 (Length: 368)
Name: NF1696_low_13
Description: NF1696
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1696_low_13 |
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Alignment Details
Target: chr8 (Bit Score: 304; Significance: 1e-171; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 11 - 354
Target Start/End: Complemental strand, 7463517 - 7463175
Alignment:
| Q |
11 |
taggctggcacatgtaacaaccgaaataaaatgcgacaaccaacggatatgtctttattttacatgcctcaagataatcatgctaaataaaaaattagca |
110 |
Q |
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| T |
7463517 |
taggctggcacatgtaacaaccgaaataaaatgcaacaaccaacggatatgtctttattttacatgcctcaagataagcatgctaaataaaaaattagca |
7463418 |
T |
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| Q |
111 |
tgtgacccacccaattgcattattttttataaagaaagaaaaagaaattaccatgtgactctcaattgcatttaaacgtgttgttaattactagtggtga |
210 |
Q |
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| T |
7463417 |
tgtgaccaacccaattgcattattttttataaagaaagaaaaagaaattaccacgtgaccctcaattgcatttaaacgtgttgttaattactagtggtga |
7463318 |
T |
|
| Q |
211 |
ataaaagaaatcatctcttttggactaaccttgagattccaatcccattcaactactatagatactaagcaccccccatggttacaagacacaagctttt |
310 |
Q |
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| T |
7463317 |
ataaaagaaatcatctcttttagactaaccttgagattccaatcccattcaactactatagatactaagcac-ccccatggttacaagacacaggcattt |
7463219 |
T |
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| Q |
311 |
ctttcatttaccaaatatagtgtaatatatttaaagcatattca |
354 |
Q |
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| T |
7463218 |
ctttcatttaccaaatatagtgtaatatatttaaagcatattca |
7463175 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 259 - 354
Target Start/End: Complemental strand, 6356168 - 6356074
Alignment:
| Q |
259 |
tcaactactatagatactaagcaccccccatggttacaagacacaagcttttctttcatttaccaaatatagtgtaatatatttaaagcatattca |
354 |
Q |
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| T |
6356168 |
tcaactactataaatactaaccacccct-atggttacaagacacaagcctttctttcatttaccatatatagtgtaatacatttaaagcatattca |
6356074 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 259 - 344
Target Start/End: Complemental strand, 6365598 - 6365514
Alignment:
| Q |
259 |
tcaactactatagatactaagcaccccccatggttacaagacacaagcttttctttcatttaccaaatatagtgtaatatatttaa |
344 |
Q |
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| T |
6365598 |
tcaactactataaatactaagcatcccct-tggtaacaaaacacaagcttttctttcatttaccaaagatagtgtaatacatttaa |
6365514 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 259 - 344
Target Start/End: Complemental strand, 6373262 - 6373177
Alignment:
| Q |
259 |
tcaactactatagatactaagcaccccccatggttacaagacacaagcttttctttcatttaccaaatatagtgtaatatatttaa |
344 |
Q |
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|||| ||||||| ||| |||||| |||| ||||||||||||||||| | |||||||||||| |||| ||||||||||| |||||| |
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| T |
6373262 |
tcaagtactataaatagtaagcatccccaatggttacaagacacaaacatttctttcatttgacaaagatagtgtaatacatttaa |
6373177 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 259 - 344
Target Start/End: Complemental strand, 6412318 - 6412233
Alignment:
| Q |
259 |
tcaactactatagatactaagcaccccccatggttacaagacacaagcttttctttcatttaccaaatatagtgtaatatatttaa |
344 |
Q |
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|||| ||||||| |||||||||| ||| || ||||||||||||||| | ||||||||||| ||||| ||||||||||| |||||| |
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| T |
6412318 |
tcaagtactataaatactaagcatcccacaaggttacaagacacaaacatttctttcattagccaaagatagtgtaatacatttaa |
6412233 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 284 - 344
Target Start/End: Complemental strand, 6393153 - 6393093
Alignment:
| Q |
284 |
ccccatggttacaagacacaagcttttctttcatttaccaaatatagtgtaatatatttaa |
344 |
Q |
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||||||||||||||||||||| | ||||||||||| ||||| ||||||||||| |||||| |
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| T |
6393153 |
ccccatggttacaagacacaaacatttctttcattagccaaagatagtgtaatacatttaa |
6393093 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 288 - 337
Target Start/End: Complemental strand, 6373667 - 6373618
Alignment:
| Q |
288 |
atggttacaagacacaagcttttctttcatttaccaaatatagtgtaata |
337 |
Q |
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||||||| ||||||||||||||||||||||| ||||| ||| ||||||| |
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| T |
6373667 |
atggttaaaagacacaagcttttctttcattagccaaagatattgtaata |
6373618 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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