View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1696_low_16 (Length: 341)
Name: NF1696_low_16
Description: NF1696
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1696_low_16 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 154; Significance: 1e-81; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 21 - 333
Target Start/End: Original strand, 2826977 - 2827283
Alignment:
| Q |
21 |
aggagttctaacatcttgtttgagatttctcaccaaagtggcttttgagaaatcggatgacggacttcgacaaggggaatgtatgttacccttttgcact |
120 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||| ||||| ||||||| |||||||||||||| |
|
|
| T |
2826977 |
aggagttctaacatcttgtttgagatttctcaccaaagtggtttttgagaaatcggaggacggacttcgaagaggggcatgtatgctacccttttgcact |
2827076 |
T |
|
| Q |
121 |
agcgaacatataaatcaaaataagttttactcacaaaaatttattttccattctaaaagttatat-ctgcatatatgatagacttaatagttagtattta |
219 |
Q |
| |
|
|||||||||||||||||||| ||||||| ||||||||| |||||||||||||||||||| ||| ||| |||||| |||||||||| |||| | |
|
|
| T |
2827077 |
tgcgaacatataaatcaaaatcagttttagtcacaaaaacatattttccattctaaaagttctatgctgaatatatcatagacttaa-------tattca |
2827169 |
T |
|
| Q |
220 |
ccaataannnnnnnnnngcagtgctattctttggaatctctatcctctttgagttgttgtgcattattctctatgcaatctactttcctaagttgtccat |
319 |
Q |
| |
|
| ||||| |||||||||||||||||||| |||| | |||||||||| ||||||||||||||||||||||||||||| ||||||||| |||| |
|
|
| T |
2827170 |
ctaataattttttttttgcagtgctattctttggaatatctaccttctttgagtttttgtgcattattctctatgcaatctacttccctaagttgaccat |
2827269 |
T |
|
| Q |
320 |
tgtagagtattatc |
333 |
Q |
| |
|
|||| | ||||||| |
|
|
| T |
2827270 |
tgtaaaatattatc |
2827283 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 237 - 332
Target Start/End: Original strand, 2820017 - 2820112
Alignment:
| Q |
237 |
gcagtgctattctttggaatctctatcctctttgagttgttgtgcattattctctatgcaatctactttcctaagttgtccattgtagagtattat |
332 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2820017 |
gcagtgctattctttggaatctctatcttctttgagttgttgtgcattattctctatgcaatctactttcctaagttgtccattgtagagtattat |
2820112 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 21 - 118
Target Start/End: Original strand, 2823577 - 2823674
Alignment:
| Q |
21 |
aggagttctaacatcttgtttgagatttctcaccaaagtggcttttgagaaatcggatgacggacttcgacaaggggaatgtatgttacccttttgca |
118 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||| || |||||||||||||||||||| |
|
|
| T |
2823577 |
aggagttctaacgtcttgtttgagatttctcaccaaagtggcttttgaggaatcggatgacggacttcgaaaagaggcatgtatgttacccttttgca |
2823674 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University